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3PRM
Asym. Unit
Info
Asym.Unit (183 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF A VIRAL OTU DOMAIN PROTEASE FROM THE CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS IN COMPLEX WITH HUMAN UBIQUITIN
Authors
:
G. C. Capodagli, M. A. Mckercher, E. A. Baker, E. M. Masters, J. S. Brunze S. D. Pegan
Date
:
30 Nov 10 (Deposition) - 26 Jan 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ubiquitin Hydrolase, Deubiquitinase, Hydrolase, Cysteine Protease, Viral Protein, Hydrolase-Hydrolase Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. C. Capodagli, M. A. Mckercher, E. A. Baker, E. M. Masters, J. S. Brunzelle, S. D. Pegan
Structural Analysis Of A Viral Ovarian Tumor Domain Proteas From The Crimean-Congo Hemorrhagic Fever Virus In Complex With Covalently Bonded Ubiquitin.
J. Virol. V. 85 3621 2011
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 3-AMINOPROPANE (3CNa)
1b: 3-AMINOPROPANE (3CNb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
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Label:
No.
Name
Count
Type
Full Name
1
3CN
2
Ligand/Ion
3-AMINOPROPANE
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:38 , CYS A:40 , TRP A:99 , THR A:150 , HIS A:151 , LYS B:48 , GLY B:75
BINDING SITE FOR RESIDUE 3CN B 76
2
AC2
SOFTWARE
CYS C:40 , TRP C:99 , THR C:150 , GLY D:75
BINDING SITE FOR RESIDUE 3CN C 179
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (-|-|-|-|-|-|-|-|B:1-75,D:1-75)
2: UBIQUITIN_1 (-|-|-|-|-|-|-|-|B:27-52,D:27-52)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
2
-
-
-
-
-
-
-
-
B:1-75
D:1-75
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
2
-
-
-
-
-
-
-
-
B:27-52
D:27-52
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Exons
(1, 2)
Info
All Exons
Exon 1.2 (B:1-75 | D:1-75)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
1.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
2
B:1-75
D:1-75
75
75
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3prmb_ (B:)
1b: SCOP_d3prmd_ (D:)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d3prmb_
B:
1b
d3prmd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_OTU_3prmC01 (C:35-152)
1b: PFAM_OTU_3prmC02 (C:35-152)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
OTU
(9)
Crimean-Congo hemorrhagic fever virus
(4)
1a
OTU-3prmC01
C:35-152
1b
OTU-3prmC02
C:35-152
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Asymmetric Unit 1
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Asym.Unit (183 KB)
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