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3PQS
Asym. Unit
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Asym.Unit (190 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURES OF PORCINE PATHOGEN APH87_TBPB
Authors
:
C. Calmettes, T. F. Moraes
Date
:
26 Nov 10 (Deposition) - 02 Feb 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipoprotein, Transferrin Receptor, Iron Acquisition, Vaccine Candidate, Beta Barrel, Transferrin Binding, Transferrin, Outermembrane, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Calmettes, R. H. Yu, L. P. Silva, D. Curran, D. C. Schriemer, A. B. Schryvers, T. F. Moraes
Structural Variations Within The Transferrin Binding Site O Transferrin-Binding Protein B, Tbpb.
J. Biol. Chem. V. 286 12683 2011
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAC
1
Ligand/Ion
CACODYLATE ION
2
GOL
15
Ligand/Ion
GLYCEROL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:170 , ARG A:190 , LYS A:219 , ARG A:221 , THR A:243 , GOL A:533 , HOH A:683
BINDING SITE FOR RESIDUE GOL A 3968
02
AC2
SOFTWARE
ASP A:297 , LEU A:379 , ARG A:383 , ASN A:492 , GLY A:493 , TYR A:496 , HOH A:564 , HOH A:572 , HOH A:735 , HOH A:741 , HOH A:821 , HOH A:1003
BINDING SITE FOR RESIDUE GOL A 529
03
AC3
SOFTWARE
GLN A:208 , LEU A:210 , GLU A:218 , THR A:238 , ALA A:239 , THR A:240 , LYS A:242 , HOH A:771 , HOH A:870
BINDING SITE FOR RESIDUE GOL A 530
04
AC4
SOFTWARE
THR A:100 , LYS A:101 , SER A:102 , GLY A:103 , SER A:104 , ASN A:105
BINDING SITE FOR RESIDUE GOL A 531
05
AC5
SOFTWARE
ASN A:168 , PRO A:169 , PRO A:245 , ILE A:246 , HOH A:693 , HOH A:747 , GOL A:3968
BINDING SITE FOR RESIDUE GOL A 533
06
AC6
SOFTWARE
GLU A:76 , HIS A:135 , GLU A:310 , GOL A:543 , HOH A:645 , HOH A:728
BINDING SITE FOR RESIDUE GOL A 534
07
AC7
SOFTWARE
GLU A:225 , ASN A:227 , ARG A:234 , GLY A:235 , LYS A:236 , HOH A:684 , HOH A:865
BINDING SITE FOR RESIDUE GOL A 535
08
AC8
SOFTWARE
ARG A:36 , ALA A:330 , SER A:354 , LEU A:356 , LYS A:360 , HOH A:937 , HOH A:985
BINDING SITE FOR RESIDUE GOL A 536
09
AC9
SOFTWARE
GLN A:34 , HIS A:273 , HOH A:783 , HOH A:889
BINDING SITE FOR RESIDUE GOL A 537
10
BC1
SOFTWARE
LYS A:300 , LYS A:345 , MET A:347 , GOL A:540 , HOH A:848 , HOH A:1000
BINDING SITE FOR RESIDUE GOL A 538
11
BC2
SOFTWARE
ASN A:206 , GLU A:225 , HOH A:867 , HOH A:868 , HOH A:935 , HOH A:997
BINDING SITE FOR RESIDUE GOL A 539
12
BC3
SOFTWARE
LYS A:300 , GOL A:538 , HOH A:960
BINDING SITE FOR RESIDUE GOL A 540
13
BC4
SOFTWARE
GLU A:31 , TYR A:395 , HOH A:647
BINDING SITE FOR RESIDUE GOL A 541
14
BC5
SOFTWARE
SER A:104 , ASN A:105 , THR A:106 , MET A:107 , ASN A:108 , LYS A:284
BINDING SITE FOR RESIDUE GOL A 542
15
BC6
SOFTWARE
HIS A:135 , PRO A:136 , LYS A:138 , PRO A:261 , GLU A:310 , ASN A:312 , GOL A:534
BINDING SITE FOR RESIDUE GOL A 543
16
BC7
SOFTWARE
ASN A:316 , ASN A:318 , GLU A:357 , TYR A:358 , GLU A:382 , HOH A:743 , HOH A:937
BINDING SITE FOR RESIDUE CAC A 532
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lipoprotein_5_3pqsA01 (A:25-525)
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Clans
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(
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(
)
Clan
:
no clan defined [family: Lipoprotein_5]
(2)
Family
:
Lipoprotein_5
(2)
Actinobacillus pleuropneumoniae (Haemophilus pleuropneumoniae)
(1)
1a
Lipoprotein_5-3pqsA01
A:25-525
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Chain A
Asymmetric Unit 1
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