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3PPS
Biol. Unit 4
Info
Asym.Unit (393 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (101 KB)
Biol.Unit 4 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ASCOMYCETE FUNGAL LACCASE FROM THIELAVIA ARENARIA
Authors
:
J. P. Kallio, J. Rouvinen, N. Hakulinen
Date
:
25 Nov 10 (Deposition) - 18 May 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta Barrel, Cupredoxin Fold, Oxidoreductase, Copper Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Kallio, C. Gasparetti, M. Andberg, H. Boer, A. Koivula, K. Kruus, J. Rouvinen, N. Hakulinen
Crystal Structure Of An Ascomycete Fungal Laccase From Thielavia Arenaria--Common Structural Features Of Asco-Laccases.
Febs J. V. 278 2283 2011
[
close entry info
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
2m: COPPER (II) ION (CUm)
2n: COPPER (II) ION (CUn)
2o: COPPER (II) ION (CUo)
2p: COPPER (II) ION (CUp)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: OXYGEN MOLECULE (OXYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
OXY
-1
Ligand/Ion
OXYGEN MOLECULE
[
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Sites
(15, 15)
Info
All Sites
01: FC4 (SOFTWARE)
02: FC5 (SOFTWARE)
03: FC6 (SOFTWARE)
04: FC7 (SOFTWARE)
05: FC8 (SOFTWARE)
06: FC9 (SOFTWARE)
07: GC1 (SOFTWARE)
08: GC2 (SOFTWARE)
09: GC3 (SOFTWARE)
10: GC4 (SOFTWARE)
11: GC5 (SOFTWARE)
12: GC6 (SOFTWARE)
13: GC7 (SOFTWARE)
14: GC8 (SOFTWARE)
15: GC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
FC4
SOFTWARE
HIS D:432 , CYS D:504 , HIS D:509
BINDING SITE FOR RESIDUE CU D 601
02
FC5
SOFTWARE
HIS D:141 , HIS D:437 , HIS D:503 , HOH D:697
BINDING SITE FOR RESIDUE CU D 602
03
FC6
SOFTWARE
HIS D:96 , HIS D:139 , HIS D:505 , CU D:604 , HOH D:697
BINDING SITE FOR RESIDUE CU D 603
04
FC7
SOFTWARE
HIS D:94 , HIS D:96 , HIS D:435 , HIS D:437 , CU D:603 , HOH D:643
BINDING SITE FOR RESIDUE CU D 604
05
FC8
SOFTWARE
THR D:88 , ASN D:89 , ASP D:182 , ASN D:555 , PHE D:557 , PRO D:558 , HOH D:586 , NAG D:701
BINDING SITE FOR RESIDUE NAG D 700
06
FC9
SOFTWARE
ASN D:56 , VAL D:57 , SER D:180 , ASP D:182 , PHE D:557 , HOH D:586 , HOH D:631 , NAG D:700 , BMA D:702
BINDING SITE FOR RESIDUE NAG D 701
07
GC1
SOFTWARE
HOH D:695 , NAG D:701
BINDING SITE FOR RESIDUE BMA D 702
08
GC2
SOFTWARE
LEU D:168 , VAL D:170 , PHE D:171 , ASN D:202 , TYR D:216 , VAL D:218 , HOH D:641 , NAG D:711
BINDING SITE FOR RESIDUE NAG D 710
09
GC3
SOFTWARE
ARG D:71 , LEU D:168 , GLY D:169 , HOH D:609 , HOH D:641 , NAG D:710 , BMA D:712
BINDING SITE FOR RESIDUE NAG D 711
10
GC4
SOFTWARE
NAG D:711 , MAN D:714
BINDING SITE FOR RESIDUE BMA D 712
11
GC5
SOFTWARE
BMA D:712 , MAN D:715
BINDING SITE FOR RESIDUE MAN D 714
12
GC6
SOFTWARE
ASN D:6 , ARG D:11 , MAN D:714
BINDING SITE FOR RESIDUE MAN D 715
13
GC7
SOFTWARE
GLN D:214 , TRP D:215 , ASN D:217 , HOH D:608 , HOH D:693
BINDING SITE FOR RESIDUE NAG D 720
14
GC8
SOFTWARE
TRP D:288 , ASN D:290 , PHE D:305 , GLN D:323 , LEU D:325 , NAG D:741
BINDING SITE FOR RESIDUE NAG D 740
15
GC9
SOFTWARE
GLN D:323 , NAG D:740
BINDING SITE FOR RESIDUE NAG D 741
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3ppsa1 (A:1-163)
1b: SCOP_d3ppsa2 (A:164-343)
1c: SCOP_d3ppsd2 (D:164-343)
1d: SCOP_d3ppsd3 (D:344-564)
1e: SCOP_d3ppsa3 (A:344-564)
1f: SCOP_d3ppsb1 (B:1-163)
1g: SCOP_d3ppsb2 (B:164-343)
1h: SCOP_d3ppsb3 (B:344-564)
1i: SCOP_d3ppsc1 (C:1-163)
1j: SCOP_d3ppsc2 (C:164-343)
1k: SCOP_d3ppsc3 (C:344-564)
1l: SCOP_d3ppsd1 (D:1-163)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Thielavia arenaria [TaxId: 113610]
(1)
1a
d3ppsa1
A:1-163
1b
d3ppsa2
A:164-343
1c
d3ppsd2
D:164-343
1d
d3ppsd3
D:344-564
1e
d3ppsa3
A:344-564
1f
d3ppsb1
B:1-163
1g
d3ppsb2
B:164-343
1h
d3ppsb3
B:344-564
1i
d3ppsc1
C:1-163
1j
d3ppsc2
C:164-343
1k
d3ppsc3
C:344-564
1l
d3ppsd1
D:1-163
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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