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3PPS
Asym. Unit
Info
Asym.Unit (393 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (101 KB)
Biol.Unit 4 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ASCOMYCETE FUNGAL LACCASE FROM THIELAVIA ARENARIA
Authors
:
J. P. Kallio, J. Rouvinen, N. Hakulinen
Date
:
25 Nov 10 (Deposition) - 18 May 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta Barrel, Cupredoxin Fold, Oxidoreductase, Copper Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Kallio, C. Gasparetti, M. Andberg, H. Boer, A. Koivula, K. Kruus, J. Rouvinen, N. Hakulinen
Crystal Structure Of An Ascomycete Fungal Laccase From Thielavia Arenaria--Common Structural Features Of Asco-Laccases.
Febs J. V. 278 2283 2011
[
close entry info
]
Hetero Components
(5, 63)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
2k: COPPER (II) ION (CUk)
2l: COPPER (II) ION (CUl)
2m: COPPER (II) ION (CUm)
2n: COPPER (II) ION (CUn)
2o: COPPER (II) ION (CUo)
2p: COPPER (II) ION (CUp)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
4af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
4ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
4ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: OXYGEN MOLECULE (OXYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
CU
16
Ligand/Ion
COPPER (II) ION
3
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
34
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
OXY
1
Ligand/Ion
OXYGEN MOLECULE
[
close Hetero Component info
]
Sites
(63, 63)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:432 , CYS A:504 , HIS A:509
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:141 , HIS A:437 , HIS A:503 , OXY A:620
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:96 , HIS A:139 , HIS A:505 , OXY A:620
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:94 , HIS A:435 , HIS A:437 , OXY A:620 , HOH A:727
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:139 , HIS A:141 , HIS A:435 , HIS A:437 , HIS A:503 , HIS A:505 , CU A:602 , CU A:603 , CU A:604
BINDING SITE FOR RESIDUE OXY A 620
06
AC6
SOFTWARE
THR A:88 , ASN A:89 , PHE A:142 , ASP A:182 , ASN A:555 , PHE A:557 , HOH A:573 , NAG A:701
BINDING SITE FOR RESIDUE NAG A 700
07
AC7
SOFTWARE
ASN A:56 , SER A:180 , PHE A:557 , HOH A:574 , HOH A:608 , NAG A:700
BINDING SITE FOR RESIDUE NAG A 701
08
AC8
SOFTWARE
LEU A:168 , VAL A:170 , ASN A:202 , TYR A:216 , LEU A:228 , HOH A:585 , NAG A:711
BINDING SITE FOR RESIDUE NAG A 710
09
AC9
SOFTWARE
ARG A:71 , LEU A:168 , GLY A:169 , NAG A:710 , BMA A:712 , HOH A:732
BINDING SITE FOR RESIDUE NAG A 711
10
BC1
SOFTWARE
NAG A:711 , MAN A:713 , MAN A:714
BINDING SITE FOR RESIDUE BMA A 712
11
BC2
SOFTWARE
HOH A:688 , BMA A:712
BINDING SITE FOR RESIDUE MAN A 713
12
BC3
SOFTWARE
BMA A:712 , MAN A:715
BINDING SITE FOR RESIDUE MAN A 714
13
BC4
SOFTWARE
PRO A:8 , ARG A:11 , MAN A:714
BINDING SITE FOR RESIDUE MAN A 715
14
BC5
SOFTWARE
GLN A:214 , TRP A:215 , ASN A:217
BINDING SITE FOR RESIDUE NAG A 720
15
BC6
SOFTWARE
ASN A:247
BINDING SITE FOR RESIDUE NAG A 730
16
BC7
SOFTWARE
TRP A:215 , TRP A:288 , ASN A:290 , PHE A:305 , GLN A:323 , LEU A:325 , HOH A:623 , NAG A:741
BINDING SITE FOR RESIDUE NAG A 740
17
BC8
SOFTWARE
PHE A:305 , GLN A:323 , NAG A:740
BINDING SITE FOR RESIDUE NAG A 741
18
BC9
SOFTWARE
PRO A:355 , THR A:358 , LEU A:359 , ASN A:376 , TRP A:417 , HOH A:597
BINDING SITE FOR RESIDUE NAG A 760
19
CC1
SOFTWARE
HIS B:432 , CYS B:504 , HIS B:509
BINDING SITE FOR RESIDUE CU B 601
20
CC2
SOFTWARE
HIS B:141 , HIS B:437 , HIS B:503 , HOH B:592
BINDING SITE FOR RESIDUE CU B 602
21
CC3
SOFTWARE
HIS B:96 , TRP B:137 , HIS B:139 , HIS B:505 , HOH B:592
BINDING SITE FOR RESIDUE CU B 603
22
CC4
SOFTWARE
HIS B:94 , HIS B:435 , HIS B:437 , HOH B:611
BINDING SITE FOR RESIDUE CU B 604
23
CC5
SOFTWARE
GLU B:43 , THR B:88 , ASN B:89 , ASP B:182 , ASN B:555 , PHE B:557 , PRO B:558 , HOH B:634 , NAG B:701
BINDING SITE FOR RESIDUE NAG B 700
24
CC6
SOFTWARE
ASN B:56 , VAL B:57 , SER B:180 , PHE B:557 , PRO B:558 , HOH B:574 , HOH B:651 , NAG B:700
BINDING SITE FOR RESIDUE NAG B 701
25
CC7
SOFTWARE
LEU B:168 , VAL B:170 , PHE B:171 , ASN B:202 , TYR B:216 , NAG B:711
BINDING SITE FOR RESIDUE NAG B 710
26
CC8
SOFTWARE
ARG B:71 , ASP B:167 , GLY B:169 , NAG B:710 , BMA B:712
BINDING SITE FOR RESIDUE NAG B 711
27
CC9
SOFTWARE
NAG B:711 , MAN B:714
BINDING SITE FOR RESIDUE BMA B 712
28
DC1
SOFTWARE
ILE B:166 , ASP B:167 , BMA B:712 , MAN B:715
BINDING SITE FOR RESIDUE MAN B 714
29
DC2
SOFTWARE
ARG B:11 , MAN B:714
BINDING SITE FOR RESIDUE MAN B 715
30
DC3
SOFTWARE
GLN B:214 , TRP B:215 , ASN B:217 , ALA B:317 , HOH B:589
BINDING SITE FOR RESIDUE NAG B 720
31
DC4
SOFTWARE
TRP B:215 , TRP B:288 , ASN B:290 , THR B:292 , PHE B:305 , ALA B:307 , GLN B:323 , LEU B:325 , NAG B:741
BINDING SITE FOR RESIDUE NAG B 740
32
DC5
SOFTWARE
PHE B:305 , GLN B:323 , NAG B:740
BINDING SITE FOR RESIDUE NAG B 741
33
DC6
SOFTWARE
PRO B:355 , SER B:356 , THR B:358 , LEU B:359 , ASN B:376
BINDING SITE FOR RESIDUE NAG B 760
34
DC7
SOFTWARE
LYS B:386 , TYR B:391 , ASN B:396 , SER B:398
BINDING SITE FOR RESIDUE NAG B 770
35
DC8
SOFTWARE
HIS C:432 , CYS C:504 , ILE C:506 , HIS C:509
BINDING SITE FOR RESIDUE CU C 601
36
DC9
SOFTWARE
HIS C:141 , HIS C:437 , HIS C:503 , HOH C:593
BINDING SITE FOR RESIDUE CU C 602
37
EC1
SOFTWARE
HIS C:96 , HIS C:139 , HIS C:505 , HOH C:593 , CU C:604
BINDING SITE FOR RESIDUE CU C 603
38
EC2
SOFTWARE
HIS C:94 , HIS C:96 , HIS C:435 , HIS C:437 , CU C:603
BINDING SITE FOR RESIDUE CU C 604
39
EC3
SOFTWARE
THR C:88 , ASN C:89 , ASP C:182 , ASN C:555 , PHE C:557 , HOH C:630 , HOH C:696 , NAG C:701
BINDING SITE FOR RESIDUE NAG C 700
40
EC4
SOFTWARE
ASN C:56 , VAL C:57 , SER C:180 , ASP C:182 , PHE C:557 , HOH C:569 , HOH C:599 , HOH C:688 , NAG C:700
BINDING SITE FOR RESIDUE NAG C 701
41
EC5
SOFTWARE
LEU C:168 , GLY C:169 , VAL C:170 , PHE C:171 , ASN C:202 , TYR C:216 , NAG C:711
BINDING SITE FOR RESIDUE NAG C 710
42
EC6
SOFTWARE
ARG C:71 , ASP C:167 , LEU C:168 , GLY C:169 , NAG C:710 , BMA C:712
BINDING SITE FOR RESIDUE NAG C 711
43
EC7
SOFTWARE
ARG C:71 , NAG C:711
BINDING SITE FOR RESIDUE BMA C 712
44
EC8
SOFTWARE
ASN C:247 , HOH C:673 , HOH C:695
BINDING SITE FOR RESIDUE NAG C 730
45
EC9
SOFTWARE
TRP C:288 , ASN C:290 , PHE C:305 , ALA C:307 , GLN C:323 , LEU C:325 , HOH C:590 , NAG C:741
BINDING SITE FOR RESIDUE NAG C 740
46
FC1
SOFTWARE
TRP C:288 , PHE C:305 , GLN C:323 , NAG C:740
BINDING SITE FOR RESIDUE NAG C 741
47
FC2
SOFTWARE
VAL A:284 , PRO C:355 , ASN C:376 , VAL C:406 , NAG C:761
BINDING SITE FOR RESIDUE NAG C 760
48
FC3
SOFTWARE
THR A:321 , PRO C:355 , NAG C:760
BINDING SITE FOR RESIDUE NAG C 761
49
FC4
SOFTWARE
HIS D:432 , CYS D:504 , HIS D:509
BINDING SITE FOR RESIDUE CU D 601
50
FC5
SOFTWARE
HIS D:141 , HIS D:437 , HIS D:503 , HOH D:697
BINDING SITE FOR RESIDUE CU D 602
51
FC6
SOFTWARE
HIS D:96 , HIS D:139 , HIS D:505 , CU D:604 , HOH D:697
BINDING SITE FOR RESIDUE CU D 603
52
FC7
SOFTWARE
HIS D:94 , HIS D:96 , HIS D:435 , HIS D:437 , CU D:603 , HOH D:643
BINDING SITE FOR RESIDUE CU D 604
53
FC8
SOFTWARE
THR D:88 , ASN D:89 , ASP D:182 , ASN D:555 , PHE D:557 , PRO D:558 , HOH D:586 , NAG D:701
BINDING SITE FOR RESIDUE NAG D 700
54
FC9
SOFTWARE
ASN D:56 , VAL D:57 , SER D:180 , ASP D:182 , PHE D:557 , HOH D:586 , HOH D:631 , NAG D:700 , BMA D:702
BINDING SITE FOR RESIDUE NAG D 701
55
GC1
SOFTWARE
HOH D:695 , NAG D:701
BINDING SITE FOR RESIDUE BMA D 702
56
GC2
SOFTWARE
LEU D:168 , VAL D:170 , PHE D:171 , ASN D:202 , TYR D:216 , VAL D:218 , HOH D:641 , NAG D:711
BINDING SITE FOR RESIDUE NAG D 710
57
GC3
SOFTWARE
ARG D:71 , LEU D:168 , GLY D:169 , HOH D:609 , HOH D:641 , NAG D:710 , BMA D:712
BINDING SITE FOR RESIDUE NAG D 711
58
GC4
SOFTWARE
NAG D:711 , MAN D:714
BINDING SITE FOR RESIDUE BMA D 712
59
GC5
SOFTWARE
BMA D:712 , MAN D:715
BINDING SITE FOR RESIDUE MAN D 714
60
GC6
SOFTWARE
ASN D:6 , ARG D:11 , MAN D:714
BINDING SITE FOR RESIDUE MAN D 715
61
GC7
SOFTWARE
GLN D:214 , TRP D:215 , ASN D:217 , HOH D:608 , HOH D:693
BINDING SITE FOR RESIDUE NAG D 720
62
GC8
SOFTWARE
TRP D:288 , ASN D:290 , PHE D:305 , GLN D:323 , LEU D:325 , NAG D:741
BINDING SITE FOR RESIDUE NAG D 740
63
GC9
SOFTWARE
GLN D:323 , NAG D:740
BINDING SITE FOR RESIDUE NAG D 741
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3ppsa1 (A:1-163)
1b: SCOP_d3ppsa2 (A:164-343)
1c: SCOP_d3ppsd2 (D:164-343)
1d: SCOP_d3ppsd3 (D:344-564)
1e: SCOP_d3ppsa3 (A:344-564)
1f: SCOP_d3ppsb1 (B:1-163)
1g: SCOP_d3ppsb2 (B:164-343)
1h: SCOP_d3ppsb3 (B:344-564)
1i: SCOP_d3ppsc1 (C:1-163)
1j: SCOP_d3ppsc2 (C:164-343)
1k: SCOP_d3ppsc3 (C:344-564)
1l: SCOP_d3ppsd1 (D:1-163)
View:
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Superfamilies
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Thielavia arenaria [TaxId: 113610]
(1)
1a
d3ppsa1
A:1-163
1b
d3ppsa2
A:164-343
1c
d3ppsd2
D:164-343
1d
d3ppsd3
D:344-564
1e
d3ppsa3
A:344-564
1f
d3ppsb1
B:1-163
1g
d3ppsb2
B:164-343
1h
d3ppsb3
B:344-564
1i
d3ppsc1
C:1-163
1j
d3ppsc2
C:164-343
1k
d3ppsc3
C:344-564
1l
d3ppsd1
D:1-163
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Asym.Unit (393 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (102 KB)
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Biol.Unit 3 (101 KB)
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Biol.Unit 4 (102 KB)
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