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Asym. Unit
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Asym.Unit (5 KB)
Biol.Unit 1 (4 KB)
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(1)
Title
:
GGVLVN SEGMENT FROM HUMAN PROSTATIC ACID PHOSPHATASE RESIDUES 260-265, INVOLVED IN SEMEN-DERIVED ENHANCER OF VIRAL INFECTION
Authors
:
A. Zhao, M. R. Sawaya, D. Eisenberg
Date
:
24 Nov 10 (Deposition) - 29 Jun 11 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Amyloid-Like Protofibril, Amyloid Fibrils, Protein Fibril
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Sievers, J. Karanicolas, H. W. Chang, A. Zhao, L. Jiang, O. Zirafi J. T. Stevens, J. Munch, D. Baker, D. Eisenberg
Structure-Based Design Of Non-Natural Amino-Acid Inhibitors Of Amyloid Fibril Formation.
Nature V. 475 96 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:1 , ASN A:6 , ACY A:8
BINDING SITE FOR RESIDUE ZN A 7
2
AC2
SOFTWARE
GLY A:1 , VAL A:3 , ASN A:6 , ZN A:7
BINDING SITE FOR RESIDUE ACY A 8
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(2, 2)
Info
All Exons
Exon 1.8 (A:1-2)
Exon 1.9 (A:2-6)
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All Exon Boundaries
1: Boundary 1.7b/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000336375
1a
ENSE00001164343
chr3:
132036211-132036420
210
PPAP_HUMAN
1-40
40
0
-
-
1.2a
ENST00000336375
2a
ENSE00000778260
chr3:
132047111-132047206
96
PPAP_HUMAN
41-72
32
0
-
-
1.3
ENST00000336375
3
ENSE00000778261
chr3:
132050491-132050577
87
PPAP_HUMAN
73-101
29
0
-
-
1.4a
ENST00000336375
4a
ENSE00000885862
chr3:
132051036-132051188
153
PPAP_HUMAN
102-152
51
0
-
-
1.6b
ENST00000336375
6b
ENSE00000778270
chr3:
132056300-132056398
99
PPAP_HUMAN
153-185
33
0
-
-
1.7b
ENST00000336375
7b
ENSE00000441916
chr3:
132061396-132061488
93
PPAP_HUMAN
186-216
31
0
-
-
1.8
ENST00000336375
8
ENSE00000778272
chr3:
132063771-132063903
133
PPAP_HUMAN
217-261
45
1
A:1-2
2
1.9
ENST00000336375
9
ENSE00000778273
chr3:
132068764-132068846
83
PPAP_HUMAN
261-288
28
1
A:2-6
5
1.10b
ENST00000336375
10b
ENSE00000778274
chr3:
132071564-132071667
104
PPAP_HUMAN
289-323
35
0
-
-
1.11c
ENST00000336375
11c
ENSE00001341899
chr3:
132075530-132077596
2067
PPAP_HUMAN
323-386
64
0
-
-
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SCOP Domains
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Pfam Domains
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