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3PP7
Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (646 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA PYRUVATE KINASE IN COMPLEX WITH THE DRUG SURAMIN, AN INHIBITOR OF GLYCOLYSIS.
Authors
:
H. P. Morgan, D. S. Auld, I. W. Mcnae, M. W. Nowicki, P. A. M. Michels, L. A. Fothergill-Gilmore, M. D. Walkinshaw
Date
:
24 Nov 10 (Deposition) - 15 Dec 10 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Tim Barrel, Glycolysis, Adp/Atp Binding, Cytosol, Symmetric Drug, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. P. Morgan, I. W. Mcnae, M. W. Nowicki, W. Zhong, P. A. Michels, D. S. Auld, L. A. Fothergill-Gilmore, M. D. Walkinshaw
The Trypanocidal Drug Suramin And Other Trypan Blue Mimetic Are Inhibitors Of Pyruvate Kinases And Bind To The Adenosin Site.
J. Biol. Chem. V. 286 31232 2011
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: PYRENE-1,3,6,8-TETRASULFONIC ACID (PTKa)
4a: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRa)
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No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
K
4
Ligand/Ion
POTASSIUM ION
3
PTK
1
Ligand/Ion
PYRENE-1,3,6,8-TETRASULFONIC ACID
4
SVR
1
Ligand/Ion
8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:194
BINDING SITE FOR RESIDUE PTK A 499
2
AC2
SOFTWARE
ILE A:89 , VAL A:177 , PHE A:212 , HOH A:583
BINDING SITE FOR RESIDUE GOL A 500
3
AC3
SOFTWARE
GLN A:354 , LEU A:357 , GLU A:359 , HOH A:628
BINDING SITE FOR RESIDUE K A 501
4
AC4
SOFTWARE
ASN A:51 , SER A:53 , ASP A:83 , THR A:84 , LYS A:238
BINDING SITE FOR RESIDUE K A 502
5
AC5
SOFTWARE
HIS A:449 , THR B:26 , PRO B:29 , ARG B:49 , ASN B:51 , HIS B:54 , GLY B:55 , TYR B:59 , GLY B:331 , ALA B:334 , LYS B:335 , HOH B:565
BINDING SITE FOR RESIDUE SVR B 499
6
AC6
SOFTWARE
ASN B:51 , SER B:53 , ASP B:83 , THR B:84
BINDING SITE FOR RESIDUE K B 500
7
AC7
SOFTWARE
GLN B:354 , LEU B:357 , GLU B:359 , HOH B:593
BINDING SITE FOR RESIDUE K B 501
8
AC8
SOFTWARE
LYS B:85 , SER B:211 , LYS B:238 , GLU B:240 , ASP B:264
BINDING SITE FOR RESIDUE GOL B 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:233-245,B:233-245)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYK_LEIME
234-246
2
A:233-245
B:233-245
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PK_3pp7B01 (B:18-363)
1b: PFAM_PK_3pp7B02 (B:18-363)
2a: PFAM_PK_C_3pp7B03 (B:377-496)
2b: PFAM_PK_C_3pp7B04 (B:377-496)
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Clans
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Organisms
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)
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)
Clan
:
PK_TIM
(63)
Family
:
PK
(17)
Leishmania mexicana
(6)
1a
PK-3pp7B01
B:18-363
1b
PK-3pp7B02
B:18-363
Clan
:
no clan defined [family: PK_C]
(19)
Family
:
PK_C
(19)
Leishmania mexicana
(6)
2a
PK_C-3pp7B03
B:377-496
2b
PK_C-3pp7B04
B:377-496
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Asymmetric Unit 1
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Asym.Unit (333 KB)
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