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3PND
Biol. Unit 1
Info
Asym.Unit (428 KB)
Biol.Unit 1 (210 KB)
Biol.Unit 2 (212 KB)
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(1)
Title
:
FAD BINDING BY APBE PROTEIN FROM SALMONELLA ENTERICA: A NEW CLASS OF FAD BINDING PROTEINS
Authors
:
J. M. Boyd, J. A. Endrizzi, T. L. Hamilton, M. R. Christopherson, D. W. Mu D. M. Downs, J. W. Peters
Date
:
18 Nov 10 (Deposition) - 05 Jan 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Apbe, Fad, Flavoprotein, Oxidoreductase, Fad Binding Domain, T-Fold, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Boyd, J. A. Endrizzi, T. L. Hamilton, M. R. Christopherson, D. W. Mulder, D. M. Downs, J. W. Peters
Fad Binding By Apbe Protein From Salmonella Enterica: A New Class Of Fad-Binding Proteins.
J. Bacteriol. V. 193 887 2011
[
close entry info
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Hetero Components
(2, 27)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
SO4
25
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC4 (SOFTWARE)
31: DC6 (SOFTWARE)
32: DC9 (SOFTWARE)
33: EC2 (SOFTWARE)
34: EC6 (SOFTWARE)
35: EC8 (SOFTWARE)
36: EC9 (SOFTWARE)
37: FC1 (SOFTWARE)
38: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:99 , GLU A:100 , HOH A:427
BINDING SITE FOR RESIDUE SO4 A 357
02
AC2
SOFTWARE
GLY A:255 , SER A:256 , ASN A:259 , SO4 A:364 , GLU C:37
BINDING SITE FOR RESIDUE SO4 A 358
03
AC3
SOFTWARE
HIS A:282 , GLY A:308 , THR A:309
BINDING SITE FOR RESIDUE SO4 A 359
04
AC4
SOFTWARE
TYR A:189 , ASP A:192 , ARG A:196 , LEU A:295 , HOH A:456
BINDING SITE FOR RESIDUE SO4 A 360
05
AC5
SOFTWARE
ASN A:283 , LYS A:328 , GLY A:330 , ARG C:91
BINDING SITE FOR RESIDUE SO4 A 361
06
AC6
SOFTWARE
ARG A:267 , HIS A:270 , LYS C:39
BINDING SITE FOR RESIDUE SO4 A 362
07
AC7
SOFTWARE
HIS A:193 , ARG A:196 , HOH A:386 , HOH A:392
BINDING SITE FOR RESIDUE SO4 A 363
08
AC8
SOFTWARE
MET A:41 , THR A:43 , ASP A:72 , SER A:76 , TYR A:78 , ALA A:119 , MET A:120 , ASP A:121 , VAL A:124 , ASP A:181 , SER A:183 , THR A:184 , GLU A:187 , ARG A:267 , HIS A:270 , VAL A:271 , ILE A:272 , SO4 A:364 , HOH A:402 , HOH A:562 , LYS C:39
BINDING SITE FOR RESIDUE FAD A 500
09
AC9
SOFTWARE
ARG A:267 , SER A:269 , HIS A:270 , VAL A:271 , SO4 A:358 , HOH A:371 , FAD A:500
BINDING SITE FOR RESIDUE SO4 A 364
10
BC1
SOFTWARE
ARG A:317 , TRP A:336 , HOH A:411 , GLN C:147
BINDING SITE FOR RESIDUE SO4 A 365
11
BC2
SOFTWARE
GLN A:310 , GLU A:329 , LYS A:334 , ARG C:91 , ASP C:177
BINDING SITE FOR RESIDUE SO4 A 366
12
BC3
SOFTWARE
GLN A:231 , SER A:256 , TYR A:257 , ARG A:258
BINDING SITE FOR RESIDUE SO4 A 367
13
BC4
SOFTWARE
ARG A:217 , ARG B:217 , GLY B:218 , ASN B:247 , SO4 B:366
BINDING SITE FOR RESIDUE SO4 A 368
14
BC5
SOFTWARE
ARG A:86 , ARG A:278
BINDING SITE FOR RESIDUE SO4 A 369
15
BC6
SOFTWARE
SER B:90 , ARG B:91 , HOH B:521 , HOH B:522
BINDING SITE FOR RESIDUE SO4 B 357
16
BC7
SOFTWARE
HIS B:89 , ARG D:318
BINDING SITE FOR RESIDUE SO4 B 358
17
BC8
SOFTWARE
GLY B:255 , ARG B:267 , HOH B:423
BINDING SITE FOR RESIDUE SO4 B 359
18
BC9
SOFTWARE
LYS B:39 , THR B:40 , MET B:41 , GLY B:42 , HOH B:407
BINDING SITE FOR RESIDUE SO4 B 360
19
CC1
SOFTWARE
HIS B:282 , ASN B:283 , LEU B:284 , GLY B:308 , THR B:309
BINDING SITE FOR RESIDUE SO4 B 361
20
CC2
SOFTWARE
ARG B:91 , PRO B:176 , ASP B:177 , HOH B:523 , HOH B:528 , ARG D:318 , GLU D:319
BINDING SITE FOR RESIDUE SO4 B 362
21
CC3
SOFTWARE
TYR B:189 , ASP B:192 , ARG B:196 , THR B:293 , LEU B:295 , HOH B:403
BINDING SITE FOR RESIDUE SO4 B 363
22
CC4
SOFTWARE
SER B:99 , GLU B:100 , GLN B:169 , HOH B:413
BINDING SITE FOR RESIDUE SO4 B 364
23
CC5
SOFTWARE
SER B:256 , ARG B:258 , HOH B:408 , ARG D:258
BINDING SITE FOR RESIDUE SO4 B 365
24
CC6
SOFTWARE
ARG A:217 , GLY A:218 , ASN A:247 , SO4 A:368 , ARG B:217 , HOH B:385
BINDING SITE FOR RESIDUE SO4 B 366
25
CC7
SOFTWARE
HOH B:2 , HOH B:4 , MET B:41 , THR B:43 , ASP B:72 , SER B:76 , TYR B:78 , ALA B:119 , ASP B:121 , VAL B:124 , PHE B:133 , ASP B:181 , SER B:183 , THR B:184 , GLU B:187 , HIS B:270 , ILE B:272 , HOH B:439 , HOH B:557 , LYS D:39
BINDING SITE FOR RESIDUE FAD B 500
26
CC8
SOFTWARE
HIS B:193 , ARG B:196 , HOH B:375
BINDING SITE FOR RESIDUE SO4 B 367
27
CC9
SOFTWARE
ARG B:317 , TRP B:336 , HOH B:372
BINDING SITE FOR RESIDUE SO4 B 368
28
DC1
SOFTWARE
HOH A:6 , ASP A:174 , HOH A:399 , ASN C:80 , ASP C:81
BINDING SITE FOR RESIDUE SO4 C 357
29
DC2
SOFTWARE
ARG B:91 , PRO B:176 , HOH B:409 , SER C:99 , GLU C:100 , HOH C:409
BINDING SITE FOR RESIDUE SO4 C 358
30
DC4
SOFTWARE
LYS A:39 , HOH A:426 , PHE C:133 , HIS C:270
BINDING SITE FOR RESIDUE SO4 C 360
31
DC6
SOFTWARE
GLU A:37 , SER C:256 , SO4 C:367 , HOH C:418
BINDING SITE FOR RESIDUE SO4 C 362
32
DC9
SOFTWARE
LYS A:39 , HOH C:15 , MET C:41 , THR C:43 , ASP C:72 , SER C:76 , TYR C:78 , ALA C:119 , MET C:120 , ASP C:121 , VAL C:124 , ASP C:181 , SER C:183 , THR C:184 , GLU C:187 , ARG C:267 , HIS C:270 , VAL C:271 , ILE C:272 , SO4 C:367 , HOH C:373 , HOH C:374 , HOH C:390 , HOH C:498
BINDING SITE FOR RESIDUE FAD C 500
33
EC2
SOFTWARE
GLN A:224 , ARG A:227 , ARG C:236 , HOH C:559
BINDING SITE FOR RESIDUE SO4 C 366
34
EC6
SOFTWARE
GLU B:37 , GLY D:255 , ARG D:267 , HOH D:381 , HOH D:388 , HOH D:429
BINDING SITE FOR RESIDUE SO4 D 359
35
EC8
SOFTWARE
ARG B:258 , GLN D:231 , SER D:256 , TYR D:257 , ARG D:258
BINDING SITE FOR RESIDUE SO4 D 361
36
EC9
SOFTWARE
LYS B:39 , MET D:41 , GLY D:42 , THR D:43 , ASP D:72 , SER D:76 , TYR D:78 , ALA D:119 , MET D:120 , ASP D:121 , VAL D:124 , VAL D:128 , PHE D:133 , ASP D:181 , SER D:183 , THR D:184 , GLU D:187 , ARG D:267 , HIS D:270 , VAL D:271 , ILE D:272 , HOH D:368 , HOH D:396 , HOH D:401 , HOH D:513
BINDING SITE FOR RESIDUE FAD D 500
37
FC1
SOFTWARE
GLY B:330 , GLU B:331 , SER D:90 , ARG D:91 , SER D:92
BINDING SITE FOR RESIDUE SO4 D 362
38
FC3
SOFTWARE
TYR B:261 , GLN D:224 , ARG D:227
BINDING SITE FOR RESIDUE SO4 D 364
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_ApbE_3pndD01 (D:68-326)
1b: PFAM_ApbE_3pndD02 (D:68-326)
1c: PFAM_ApbE_3pndD03 (D:68-326)
1d: PFAM_ApbE_3pndD04 (D:68-326)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ApbE]
(4)
Family
:
ApbE
(4)
Salmonella typhimurium
(1)
1a
ApbE-3pndD01
D:68-326
1b
ApbE-3pndD02
D:68-326
1c
ApbE-3pndD03
D:68-326
1d
ApbE-3pndD04
D:68-326
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