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3PND
Asym. Unit
Info
Asym.Unit (428 KB)
Biol.Unit 1 (210 KB)
Biol.Unit 2 (212 KB)
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(1)
Title
:
FAD BINDING BY APBE PROTEIN FROM SALMONELLA ENTERICA: A NEW CLASS OF FAD BINDING PROTEINS
Authors
:
J. M. Boyd, J. A. Endrizzi, T. L. Hamilton, M. R. Christopherson, D. W. Mu D. M. Downs, J. W. Peters
Date
:
18 Nov 10 (Deposition) - 05 Jan 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Apbe, Fad, Flavoprotein, Oxidoreductase, Fad Binding Domain, T-Fold, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Boyd, J. A. Endrizzi, T. L. Hamilton, M. R. Christopherson, D. W. Mulder, D. M. Downs, J. W. Peters
Fad Binding By Apbe Protein From Salmonella Enterica: A New Class Of Fad-Binding Proteins.
J. Bacteriol. V. 193 887 2011
[
close entry info
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Hetero Components
(2, 48)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
SO4
44
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:99 , GLU A:100 , HOH A:427
BINDING SITE FOR RESIDUE SO4 A 357
02
AC2
SOFTWARE
GLY A:255 , SER A:256 , ASN A:259 , SO4 A:364 , GLU C:37
BINDING SITE FOR RESIDUE SO4 A 358
03
AC3
SOFTWARE
HIS A:282 , GLY A:308 , THR A:309
BINDING SITE FOR RESIDUE SO4 A 359
04
AC4
SOFTWARE
TYR A:189 , ASP A:192 , ARG A:196 , LEU A:295 , HOH A:456
BINDING SITE FOR RESIDUE SO4 A 360
05
AC5
SOFTWARE
ASN A:283 , LYS A:328 , GLY A:330 , ARG C:91
BINDING SITE FOR RESIDUE SO4 A 361
06
AC6
SOFTWARE
ARG A:267 , HIS A:270 , LYS C:39
BINDING SITE FOR RESIDUE SO4 A 362
07
AC7
SOFTWARE
HIS A:193 , ARG A:196 , HOH A:386 , HOH A:392
BINDING SITE FOR RESIDUE SO4 A 363
08
AC8
SOFTWARE
MET A:41 , THR A:43 , ASP A:72 , SER A:76 , TYR A:78 , ALA A:119 , MET A:120 , ASP A:121 , VAL A:124 , ASP A:181 , SER A:183 , THR A:184 , GLU A:187 , ARG A:267 , HIS A:270 , VAL A:271 , ILE A:272 , SO4 A:364 , HOH A:402 , HOH A:562 , LYS C:39
BINDING SITE FOR RESIDUE FAD A 500
09
AC9
SOFTWARE
ARG A:267 , SER A:269 , HIS A:270 , VAL A:271 , SO4 A:358 , HOH A:371 , FAD A:500
BINDING SITE FOR RESIDUE SO4 A 364
10
BC1
SOFTWARE
ARG A:317 , TRP A:336 , HOH A:411 , GLN C:147
BINDING SITE FOR RESIDUE SO4 A 365
11
BC2
SOFTWARE
GLN A:310 , GLU A:329 , LYS A:334 , ARG C:91 , ASP C:177
BINDING SITE FOR RESIDUE SO4 A 366
12
BC3
SOFTWARE
GLN A:231 , SER A:256 , TYR A:257 , ARG A:258
BINDING SITE FOR RESIDUE SO4 A 367
13
BC4
SOFTWARE
ARG A:217 , ARG B:217 , GLY B:218 , ASN B:247 , SO4 B:366
BINDING SITE FOR RESIDUE SO4 A 368
14
BC5
SOFTWARE
ARG A:86 , ARG A:278
BINDING SITE FOR RESIDUE SO4 A 369
15
BC6
SOFTWARE
SER B:90 , ARG B:91 , HOH B:521 , HOH B:522
BINDING SITE FOR RESIDUE SO4 B 357
16
BC7
SOFTWARE
HIS B:89 , ARG D:318
BINDING SITE FOR RESIDUE SO4 B 358
17
BC8
SOFTWARE
GLY B:255 , ARG B:267 , HOH B:423
BINDING SITE FOR RESIDUE SO4 B 359
18
BC9
SOFTWARE
LYS B:39 , THR B:40 , MET B:41 , GLY B:42 , HOH B:407
BINDING SITE FOR RESIDUE SO4 B 360
19
CC1
SOFTWARE
HIS B:282 , ASN B:283 , LEU B:284 , GLY B:308 , THR B:309
BINDING SITE FOR RESIDUE SO4 B 361
20
CC2
SOFTWARE
ARG B:91 , PRO B:176 , ASP B:177 , HOH B:523 , HOH B:528 , ARG D:318 , GLU D:319
BINDING SITE FOR RESIDUE SO4 B 362
21
CC3
SOFTWARE
TYR B:189 , ASP B:192 , ARG B:196 , THR B:293 , LEU B:295 , HOH B:403
BINDING SITE FOR RESIDUE SO4 B 363
22
CC4
SOFTWARE
SER B:99 , GLU B:100 , GLN B:169 , HOH B:413
BINDING SITE FOR RESIDUE SO4 B 364
23
CC5
SOFTWARE
SER B:256 , ARG B:258 , HOH B:408 , ARG D:258
BINDING SITE FOR RESIDUE SO4 B 365
24
CC6
SOFTWARE
ARG A:217 , GLY A:218 , ASN A:247 , SO4 A:368 , ARG B:217 , HOH B:385
BINDING SITE FOR RESIDUE SO4 B 366
25
CC7
SOFTWARE
HOH B:2 , HOH B:4 , MET B:41 , THR B:43 , ASP B:72 , SER B:76 , TYR B:78 , ALA B:119 , ASP B:121 , VAL B:124 , PHE B:133 , ASP B:181 , SER B:183 , THR B:184 , GLU B:187 , HIS B:270 , ILE B:272 , HOH B:439 , HOH B:557 , LYS D:39
BINDING SITE FOR RESIDUE FAD B 500
26
CC8
SOFTWARE
HIS B:193 , ARG B:196 , HOH B:375
BINDING SITE FOR RESIDUE SO4 B 367
27
CC9
SOFTWARE
ARG B:317 , TRP B:336 , HOH B:372
BINDING SITE FOR RESIDUE SO4 B 368
28
DC1
SOFTWARE
HOH A:6 , ASP A:174 , HOH A:399 , ASN C:80 , ASP C:81
BINDING SITE FOR RESIDUE SO4 C 357
29
DC2
SOFTWARE
ARG B:91 , PRO B:176 , HOH B:409 , SER C:99 , GLU C:100 , HOH C:409
BINDING SITE FOR RESIDUE SO4 C 358
30
DC3
SOFTWARE
TYR C:189 , ASP C:192 , ARG C:196 , LEU C:295 , HOH C:414
BINDING SITE FOR RESIDUE SO4 C 359
31
DC4
SOFTWARE
LYS A:39 , HOH A:426 , PHE C:133 , HIS C:270
BINDING SITE FOR RESIDUE SO4 C 360
32
DC5
SOFTWARE
GLY C:218 , ASN C:247 , HOH C:400 , GLY D:218 , ASN D:247
BINDING SITE FOR RESIDUE SO4 C 361
33
DC6
SOFTWARE
GLU A:37 , SER C:256 , SO4 C:367 , HOH C:418
BINDING SITE FOR RESIDUE SO4 C 362
34
DC7
SOFTWARE
HIS C:282 , ASN C:283 , LEU C:284 , GLY C:308 , THR C:309
BINDING SITE FOR RESIDUE SO4 C 363
35
DC8
SOFTWARE
PRO C:126 , ASN C:129 , TYR C:179 , HOH C:377
BINDING SITE FOR RESIDUE SO4 C 364
36
DC9
SOFTWARE
LYS A:39 , HOH C:15 , MET C:41 , THR C:43 , ASP C:72 , SER C:76 , TYR C:78 , ALA C:119 , MET C:120 , ASP C:121 , VAL C:124 , ASP C:181 , SER C:183 , THR C:184 , GLU C:187 , ARG C:267 , HIS C:270 , VAL C:271 , ILE C:272 , SO4 C:367 , HOH C:373 , HOH C:374 , HOH C:390 , HOH C:498
BINDING SITE FOR RESIDUE FAD C 500
37
EC1
SOFTWARE
THR C:26 , THR C:27 , THR C:28 , GLN D:172
BINDING SITE FOR RESIDUE SO4 C 365
38
EC2
SOFTWARE
GLN A:224 , ARG A:227 , ARG C:236 , HOH C:559
BINDING SITE FOR RESIDUE SO4 C 366
39
EC3
SOFTWARE
ARG C:267 , SER C:269 , HIS C:270 , VAL C:271 , SO4 C:362 , HOH C:392 , FAD C:500
BINDING SITE FOR RESIDUE SO4 C 367
40
EC4
SOFTWARE
SER D:99 , GLU D:100 , GLN D:169
BINDING SITE FOR RESIDUE SO4 D 357
41
EC5
SOFTWARE
ARG D:165 , ALA D:166 , HIS D:168
BINDING SITE FOR RESIDUE SO4 D 358
42
EC6
SOFTWARE
GLU B:37 , GLY D:255 , ARG D:267 , HOH D:381 , HOH D:388 , HOH D:429
BINDING SITE FOR RESIDUE SO4 D 359
43
EC7
SOFTWARE
HIS D:282 , ASN D:283 , LEU D:284 , GLY D:308 , THR D:309
BINDING SITE FOR RESIDUE SO4 D 360
44
EC8
SOFTWARE
ARG B:258 , GLN D:231 , SER D:256 , TYR D:257 , ARG D:258
BINDING SITE FOR RESIDUE SO4 D 361
45
EC9
SOFTWARE
LYS B:39 , MET D:41 , GLY D:42 , THR D:43 , ASP D:72 , SER D:76 , TYR D:78 , ALA D:119 , MET D:120 , ASP D:121 , VAL D:124 , VAL D:128 , PHE D:133 , ASP D:181 , SER D:183 , THR D:184 , GLU D:187 , ARG D:267 , HIS D:270 , VAL D:271 , ILE D:272 , HOH D:368 , HOH D:396 , HOH D:401 , HOH D:513
BINDING SITE FOR RESIDUE FAD D 500
46
FC1
SOFTWARE
GLY B:330 , GLU B:331 , SER D:90 , ARG D:91 , SER D:92
BINDING SITE FOR RESIDUE SO4 D 362
47
FC2
SOFTWARE
GLN D:158 , HIS D:159
BINDING SITE FOR RESIDUE SO4 D 363
48
FC3
SOFTWARE
TYR B:261 , GLN D:224 , ARG D:227
BINDING SITE FOR RESIDUE SO4 D 364
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_ApbE_3pndD01 (D:68-326)
1b: PFAM_ApbE_3pndD02 (D:68-326)
1c: PFAM_ApbE_3pndD03 (D:68-326)
1d: PFAM_ApbE_3pndD04 (D:68-326)
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Clan
:
no clan defined [family: ApbE]
(4)
Family
:
ApbE
(4)
Salmonella typhimurium
(1)
1a
ApbE-3pndD01
D:68-326
1b
ApbE-3pndD02
D:68-326
1c
ApbE-3pndD03
D:68-326
1d
ApbE-3pndD04
D:68-326
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