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3PMX
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
LIGAND-BINDING DOMAIN OF GLUA2 (FLIP) IONOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH AN ALLOSTERIC MODULATOR
Authors
:
J. K. F. Maclean, C. Jamieson, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Date
:
18 Nov 10 (Deposition) - 12 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transport Protein, Membrane Protein, Fusion Protein, Chimera Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Jamieson, J. K. Maclean, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Structure Based Evolution Of A Novel Series Of Positive Modulators Of The Ampa Receptor.
Bioorg. Med. Chem. Lett. V. 21 805 2011
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: N-[(2S)-5-{[5-(TRIFLUOROMETHYL)FUR... (808a)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: GLUTAMIC ACID (GLUa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
808
1
Ligand/Ion
N-[(2S)-5-{[5-(TRIFLUOROMETHYL)FURAN-2-YL]METHYL}-2,3-DIHYDRO-1H-INDEN-2-YL]PROPANE-2-SULFONAMIDE
2
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
5
GOL
2
Ligand/Ion
GLYCEROL
6
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:409 , HOH A:419 , HOH A:422
BINDING SITE FOR RESIDUE GLU A 264
02
AC2
SOFTWARE
MET A:19 , HIS A:23 , GLU A:24 , ARG A:31 , LYS A:240 , SO4 A:268 , HOH A:575
BINDING SITE FOR RESIDUE SO4 A 265
03
AC3
SOFTWARE
SER A:140 , LYS A:144 , ARG A:148 , HOH A:314 , HOH A:406 , HOH A:423 , HOH A:576
BINDING SITE FOR RESIDUE SO4 A 266
04
AC4
SOFTWARE
GLU A:27 , GLY A:28 , ASN A:29 , GLU A:30 , ARG A:149 , EDO A:275 , HOH A:297 , HOH A:300
BINDING SITE FOR RESIDUE SO4 A 267
05
AC5
SOFTWARE
GLU A:24 , ARG A:31 , HIS A:46 , LYS A:240 , GLN A:244 , SO4 A:265 , HOH A:344
BINDING SITE FOR RESIDUE SO4 A 268
06
AC6
SOFTWARE
LYS A:50 , ARG A:148 , ARG A:149 , TRP A:159 , ARG A:163
BINDING SITE FOR RESIDUE GOL A 269
07
AC7
SOFTWARE
SER A:108 , LEU A:109 , SER A:194 , GLU A:198 , ASN A:214 , HOH A:331 , HOH A:461 , HOH A:582
BINDING SITE FOR RESIDUE GOL A 270
08
AC8
SOFTWARE
SER A:108 , SER A:217 , HOH A:279 , HOH A:457
BINDING SITE FOR RESIDUE DMS A 271
09
AC9
SOFTWARE
LYS A:4 , VAL A:7 , GLY A:81 , LYS A:82 , ALA A:83 , ASP A:84 , HOH A:349
BINDING SITE FOR RESIDUE DMS A 272
10
BC1
SOFTWARE
GLY A:62 , THR A:93 , VAL A:95 , ARG A:96 , GLU A:145 , HOH A:380 , HOH A:423 , HOH A:586
BINDING SITE FOR RESIDUE EDO A 273
11
BC2
SOFTWARE
PHE A:146 , ASP A:216 , LYS A:218 , GLU A:243 , HOH A:280 , HOH A:302 , HOH A:372 , HOH A:397
BINDING SITE FOR RESIDUE EDO A 274
12
BC3
SOFTWARE
ASN A:29 , LYS A:50 , TYR A:51 , SO4 A:267 , HOH A:300 , HOH A:366
BINDING SITE FOR RESIDUE EDO A 275
13
BC4
SOFTWARE
ASN A:214 , ASP A:216 , SER A:217 , ASP A:248 , HOH A:394
BINDING SITE FOR RESIDUE EDO A 276
14
BC5
SOFTWARE
ILE A:92 , LYS A:104 , PRO A:105 , MET A:107 , SER A:108 , LYS A:218 , GLY A:219 , LEU A:239 , SER A:242 , HOH A:307
BINDING SITE FOR RESIDUE 808 A 277
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3pmxa_ (A:)
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Protein Domains
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Organisms
(
)
(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3pmxa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lig_chan_3pmxA01 (A:119-262)
2a: PFAM_Lig_chan_Glu_bd_3pmxA02 (A:15-80)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-3pmxA01
A:119-262
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-3pmxA02
A:15-80
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Chain A
Asymmetric Unit 1
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Asym.Unit (58 KB)
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