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Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
LIGAND-BINDING DOMAIN OF GLUA2 (FLIP) IONOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH AN ALLOSTERIC MODULATOR
Authors
:
J. K. F. Maclean, C. Jamieson, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Date
:
18 Nov 10 (Deposition) - 12 Jan 11 (Release) - 01 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transport Protein, Membrane Protein, Fusion Protein, Chimera Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Jamieson, J. K. Maclean, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Structure Based Evolution Of A Novel Series Of Positive Modulators Of The Ampa Receptor.
Bioorg. Med. Chem. Lett. V. 21 805 2011
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: N-[(2S)-5-{[4-(HYDROXYMETHYL)-3-(T... (G69a)
3a: GLUTAMIC ACID (GLUa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
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No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
G69
1
Ligand/Ion
N-[(2S)-5-{[4-(HYDROXYMETHYL)-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL]METHYL}-2,3-DIHYDRO-1H-INDEN-2-YL]PROPANE-2-SULFONAMIDE
3
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:62 , PRO A:90 , LEU A:91 , THR A:92 , ARG A:97 , GLY A:142 , SER A:143 , THR A:144 , GLU A:194 , TYR A:221 , HOH A:433 , HOH A:491
BINDING SITE FOR RESIDUE GLU A 301
02
AC2
SOFTWARE
ASP A:140 , SER A:141 , LYS A:145 , ARG A:149 , HOH A:401 , HOH A:498
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
GLU A:28 , GLY A:29 , ASN A:30 , ARG A:150 , HOH A:534
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
MET A:20 , HIS A:24 , GLU A:25 , ARG A:32 , LYS A:241 , SO4 A:306
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
ARG A:204 , HOH A:414 , HOH A:473
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
GLU A:25 , ARG A:32 , HIS A:47 , LYS A:241 , GLN A:245 , SO4 A:304 , GOL A:310
BINDING SITE FOR RESIDUE SO4 A 306
07
AC7
SOFTWARE
ARG A:204 , LYS A:259
BINDING SITE FOR RESIDUE SO4 A 307
08
AC8
SOFTWARE
SER A:195 , GLU A:199 , ASN A:215 , HOH A:520
BINDING SITE FOR RESIDUE SO4 A 308
09
AC9
SOFTWARE
LYS A:51 , ARG A:149 , TRP A:160 , ARG A:164
BINDING SITE FOR RESIDUE GOL A 309
10
BC1
SOFTWARE
ARG A:32 , LEU A:54 , SO4 A:306
BINDING SITE FOR RESIDUE GOL A 310
11
BC2
SOFTWARE
MET A:108 , SER A:109 , SER A:218 , G69 A:312
BINDING SITE FOR RESIDUE DMS A 311
12
BC3
SOFTWARE
ILE A:93 , LYS A:105 , PRO A:106 , SER A:109 , LYS A:219 , GLY A:220 , VAL A:239 , LEU A:240 , SER A:243 , DMS A:311
BINDING SITE FOR RESIDUE G69 A 312
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3pmwa_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3pmwa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lig_chan_3pmwA01 (A:121-263)
2a: PFAM_Lig_chan_Glu_bd_3pmwA02 (A:16-81)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-3pmwA01
A:121-263
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-3pmwA02
A:16-81
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Chain A
Asymmetric Unit 1
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