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3PMV
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
LIGAND-BINDING DOMAIN OF GLUA2 (FLIP) IONOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH AN ALLOSTERIC MODULATOR
Authors
:
J. K. F. Maclean, C. Jamieson, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Date
:
18 Nov 10 (Deposition) - 12 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transport Protein, Membrane Protein, Fusion Protein, Chimera Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Jamieson, J. K. Maclean, C. I. Brown, R. A. Campbell, K. J. Gillen, J. Gillespie, B. Kazemier, M. Kiczun, Y. Lamont, A. J. Lyons, E. M. Moir J. A. Morrow, J. Pantling, Z. Rankovic, L. Smith
Structure Based Evolution Of A Novel Series Of Positive Modulators Of The Ampa Receptor.
Bioorg. Med. Chem. Lett. V. 21 805 2011
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: N-[(2S)-2-{4-[4-(HYDROXYMETHYL)-3-... (557a)
2a: GLUTAMIC ACID (GLUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
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No.
Name
Count
Type
Full Name
1
557
1
Ligand/Ion
N-[(2S)-2-{4-[4-(HYDROXYMETHYL)-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL]PHENYL}PROPYL]PROPANE-2-SULFONAMIDE
2
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
3
GOL
4
Ligand/Ion
GLYCEROL
4
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:286 , HOH A:292 , HOH A:414
BINDING SITE FOR RESIDUE GLU A 264
02
AC2
SOFTWARE
HIS A:23 , GLU A:24 , ARG A:31 , LYS A:240 , SO4 A:268 , HOH A:337 , HOH A:338
BINDING SITE FOR RESIDUE SO4 A 265
03
AC3
SOFTWARE
GLY A:28 , ASN A:29 , GLU A:30 , LYS A:52 , ARG A:149 , HOH A:380 , HOH A:381 , HOH A:570
BINDING SITE FOR RESIDUE SO4 A 266
04
AC4
SOFTWARE
ASP A:139 , SER A:140 , LYS A:144 , ARG A:148 , HOH A:296 , HOH A:391 , HOH A:447 , HOH A:475 , HOH A:551
BINDING SITE FOR RESIDUE SO4 A 267
05
AC5
SOFTWARE
GLU A:24 , ARG A:31 , HIS A:46 , LYS A:240 , GLN A:244 , SO4 A:265
BINDING SITE FOR RESIDUE SO4 A 268
06
AC6
SOFTWARE
LYS A:82 , LYS A:116 , GOL A:274 , HOH A:535
BINDING SITE FOR RESIDUE SO4 A 269
07
AC7
SOFTWARE
ILE A:92 , LYS A:104 , PRO A:105 , PHE A:106 , MET A:107 , SER A:108 , SER A:217 , LYS A:218 , GLY A:219 , LEU A:239 , HOH A:358 , HOH A:376 , HOH A:459 , HOH A:484
BINDING SITE FOR RESIDUE 557 A 270
08
AC8
SOFTWARE
SER A:108 , LEU A:109 , SER A:194 , GLU A:198 , ASN A:214 , HOH A:421 , HOH A:473 , HOH A:591
BINDING SITE FOR RESIDUE GOL A 271
09
AC9
SOFTWARE
LYS A:129 , ARG A:203 , HOH A:285
BINDING SITE FOR RESIDUE GOL A 272
10
BC1
SOFTWARE
LYS A:50 , ARG A:148 , TRP A:159 , ARG A:163 , HOH A:354
BINDING SITE FOR RESIDUE GOL A 273
11
BC2
SOFTWARE
TYR A:80 , LYS A:116 , LYS A:185 , GLY A:186 , SO4 A:269 , HOH A:333
BINDING SITE FOR RESIDUE GOL A 274
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3pmva_ (A:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3pmva_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lig_chan_3pmvA01 (A:120-262)
2a: PFAM_Lig_chan_Glu_bd_3pmvA02 (A:15-80)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-3pmvA01
A:120-262
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-3pmvA02
A:15-80
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Chain A
Asymmetric Unit 1
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