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Getting 'Exon' information from database.
3PMB
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
2.9 ANGSTROM CRYSTAL STRUCTURE OF BOVINE THROMBIN IN TETRAGONAL SPACEGROUP
Authors
:
H. T. Wright, J. N. Scarsdale, B. J. Desai
Date
:
16 Nov 10 (Deposition) - 20 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protease, Thrombosis, Fibrinolosys, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Desai, R. S. Boothello, A. Y. Mehta, J. N. Scarsdale, H. T. Wright, U. R. Desai
Interaction Of Thrombin With Sucrose Octasulfate.
Biochemistry V. 50 6973 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
2
Ligand/Ion
SODIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH D:10 , ARG D:221A , LYS D:224 , HOH D:261
BINDING SITE FOR RESIDUE NA D 1
2
AC2
SOFTWARE
ARG B:221A , LYS B:224
BINDING SITE FOR RESIDUE NA B 2
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
B/D
D
222
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:16-243,D:16-243)
2: TRYPSIN_HIS (B:53-58,D:53-58)
3: TRYPSIN_SER (B:189-200,D:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
2
B:16-243
D:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
2
B:53-58
D:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
2
B:189-200
D:189-200
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Exons
(7, 16)
Info
All Exons
Exon 1.8 (A:1C-1A | - | C:1C-1A | -)
Exon 1.9 (A:1A-14L | B:16-29 | C:1A-14L | D:...)
Exon 1.10 (- | B:29-70 | - | D:29-74)
Exon 1.11 (- | B:79-129B | - | D:77A-129B)
Exon 1.12 (- | B:129B-184 (gaps) | - | D:129B...)
Exon 1.13 (- | B:184-202 | - | D:184-202)
Exon 1.14 (- | B:203-243 (gaps) | - | D:203-2...)
View:
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All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
6: Boundary 1.12/1.13
7: Boundary 1.13/1.14
8: Boundary 1.14/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000009406
1
ENSBTAE00000076598
chr15:
77004894-77005007
114
THRB_BOVIN
1-27
27
0
-
-
1.2
ENSBTAT00000009406
2
ENSBTAE00000076606
chr15:
77005352-77005515
164
THRB_BOVIN
27-81
55
0
-
-
1.3
ENSBTAT00000009406
3
ENSBTAE00000306249
chr15:
77006130-77006154
25
THRB_BOVIN
82-90
9
0
-
-
1.4
ENSBTAT00000009406
4
ENSBTAE00000076608
chr15:
77006384-77006434
51
THRB_BOVIN
90-107
18
0
-
-
1.5
ENSBTAT00000009406
5
ENSBTAE00000076609
chr15:
77007812-77007917
106
THRB_BOVIN
107-142
36
0
-
-
1.6
ENSBTAT00000009406
6
ENSBTAE00000076610
chr15:
77008015-77008151
137
THRB_BOVIN
142-188
47
0
-
-
1.7
ENSBTAT00000009406
7
ENSBTAE00000076611
chr15:
77009362-77009676
315
THRB_BOVIN
188-293
106
0
-
-
1.8
ENSBTAT00000009406
8
ENSBTAE00000076614
chr15:
77009972-77010106
135
THRB_BOVIN
293-338
46
2
A:1C-1A
-
C:1C-1A
-
3
-
3
-
1.9
ENSBTAT00000009406
9
ENSBTAE00000076615
chr15:
77010182-77010308
127
THRB_BOVIN
338-380
43
4
A:1A-14L
B:16-29
C:1A-14L
D:16-29
27
14
27
14
1.10
ENSBTAT00000009406
10
ENSBTAE00000076616
chr15:
77011290-77011457
168
THRB_BOVIN
380-436
57
2
-
B:29-70
-
D:29-74
-
52
-
56
1.11
ENSBTAT00000009406
11
ENSBTAE00000076617
chr15:
77011956-77012129
174
THRB_BOVIN
436-494
59
2
-
B:79-129B
-
D:77A-129B
-
54
-
56
1.12
ENSBTAT00000009406
12
ENSBTAE00000306240
chr15:
77012378-77012559
182
THRB_BOVIN
494-555
62
2
-
B:129B-184 (gaps)
-
D:129B-184
-
62
-
62
1.13
ENSBTAT00000009406
13
ENSBTAE00000076620
chr15:
77018853-77018923
71
THRB_BOVIN
555-578
24
2
-
B:184-202
-
D:184-202
-
24
-
24
1.14
ENSBTAT00000009406
14
ENSBTAE00000076621
chr15:
77019058-77019320
263
THRB_BOVIN
579-625
47
2
-
B:203-243 (gaps)
-
D:203-243 (gaps)
-
44
-
44
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SCOP Domains
(0, 0)
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Pfam Domains
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Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
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