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3PMA
Biol. Unit 4
Info
Asym.Unit (195 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (374 KB)
Biol.Unit 4 (188 KB)
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Title
:
2.2 ANGSTROM CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN BOVINE THROMBIN AND SUCROSE OCTASULFATE
Authors
:
H. T. Wright, J. N. Scarsdale, B. J. Desai
Date
:
16 Nov 10 (Deposition) - 20 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Protease, Thrombosis, Fibrinolysis, Agonist, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Desai, R. S. Boothello, A. Y. Mehta, J. N. Scarsdale, H. T. Wright, U. R. Desai
Interaction Of Thrombin With Sucrose Octasulfate.
Biochemistry V. 50 6973 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: SUCROSE OCTASULFATE (SCRa)
3b: SUCROSE OCTASULFATE (SCRb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
NA
-1
Ligand/Ion
SODIUM ION
3
SCR
2
Ligand/Ion
SUCROSE OCTASULFATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:221A , LYS B:224 , HOH B:260 , HOH B:264 , HOH B:267 , HOH B:297
BINDING SITE FOR RESIDUE NA B 1
2
AC2
SOFTWARE
HOH D:3 , HOH D:7 , ARG D:221A , LYS D:224 , HOH D:255 , HOH D:262
BINDING SITE FOR RESIDUE NA D 2
3
AC3
SOFTWARE
ASP B:125 , LYS B:126 , HOH B:148 , PHE B:232 , LYS B:235 , GLN B:239 , HOH B:298 , HOH B:318 , LYS D:87 , TYR D:89 , LYS D:240 , VAL D:241 , ARG D:244
BINDING SITE FOR RESIDUE SCR B 248
4
AC4
SOFTWARE
LYS B:240 , HIS D:91 , PRO D:92 , LEU D:234 , LYS D:236 , TRP D:237 , LYS D:240 , HOH D:249 , HOH D:250 , HOH D:260 , HOH D:353
BINDING SITE FOR RESIDUE SCR D 248
5
AC5
SOFTWARE
ARG B:165 , PRO B:166 , HOH B:311 , HOH B:348
BINDING SITE FOR RESIDUE CIT B 3
6
AC6
SOFTWARE
ASN D:60G
BINDING SITE FOR RESIDUE CIT D 4
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain B/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
B/D
D
222
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:16-243,D:16-243)
2: TRYPSIN_HIS (B:53-58,D:53-58)
3: TRYPSIN_SER (B:189-200,D:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
2
B:16-243
D:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
2
B:53-58
D:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
2
B:189-200
D:189-200
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (195 KB)
Header - Asym.Unit
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Biol.Unit 3 (374 KB)
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