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3PKN
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MLLE DOMAIN OF POLY(A) BINDING PROTEIN IN COMPLEX WITH PAM2 MOTIF OF LA-RELATED PROTEIN 4 (LARP4)
Authors
:
J. Xie, G. Kozlov, K. Gehring
Date
:
11 Nov 10 (Deposition) - 12 Jan 11 (Release) - 16 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
All Helical Domain, Protein Binding, La-Related Protein 4
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Yang, S. A. Gaidamakov, J. Xie, J. Lee, L. Martino, G. Kozlov, A. K. Crawford, A. N. Russo, M. R. Conte, K. Gehring, R. J. Maraia
La-Related Protein 4 Binds Poly(A), Interacts With The Poly(A)-Binding Protein Mlle Domain Via A Variant Pam2W Motif, And Can Promote Mrna Stability.
Mol. Cell. Biol. V. 31 542 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: IODIDE ION (IODa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
1
Ligand/Ion
IODIDE ION
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:574 , PRO A:575 , THR A:576 , LEU A:577 , ARG A:604
BINDING SITE FOR RESIDUE SO4 A 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.11 (A:544-563)
Exon 1.12a (A:563-606)
Exon 1.13a (A:607-622)
Exon 2.5a (B:15-25)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10b/1.11
2: Boundary 1.11/1.12a
3: Boundary 1.12a/1.13a
4: Boundary 1.13a/1.14e
5: Boundary 2.1b/2.5a
6: Boundary 2.5a/2.6d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000318607
1e
ENSE00002107718
chr8:
101734940-101733619
1322
PABP1_HUMAN
1-65
65
0
-
-
1.2e
ENST00000318607
2e
ENSE00002179154
chr8:
101730508-101730315
194
PABP1_HUMAN
65-129
65
0
-
-
1.2i
ENST00000318607
2i
ENSE00001088711
chr8:
101730116-101730001
116
PABP1_HUMAN
130-168
39
0
-
-
1.3b
ENST00000318607
3b
ENSE00001676241
chr8:
101727829-101727690
140
PABP1_HUMAN
168-215
48
0
-
-
1.4c
ENST00000318607
4c
ENSE00001088702
chr8:
101725409-101725315
95
PABP1_HUMAN
215-246
32
0
-
-
1.5a
ENST00000318607
5a
ENSE00001088717
chr8:
101725017-101724880
138
PABP1_HUMAN
247-292
46
0
-
-
1.6a
ENST00000318607
6a
ENSE00001088710
chr8:
101724685-101724590
96
PABP1_HUMAN
293-324
32
0
-
-
1.7b
ENST00000318607
7b
ENSE00002184139
chr8:
101721959-101721687
273
PABP1_HUMAN
325-415
91
0
-
-
1.8c
ENST00000318607
8c
ENSE00001088708
chr8:
101721451-101721361
91
PABP1_HUMAN
416-446
31
0
-
-
1.9b
ENST00000318607
9b
ENSE00001088705
chr8:
101719225-101719115
111
PABP1_HUMAN
446-483
38
0
-
-
1.10b
ENST00000318607
10b
ENSE00002199412
chr8:
101719033-101718879
155
PABP1_HUMAN
483-534
52
0
-
-
1.11
ENST00000318607
11
ENSE00001088703
chr8:
101717901-101717817
85
PABP1_HUMAN
535-563
29
1
A:544-563
20
1.12a
ENST00000318607
12a
ENSE00001088713
chr8:
101717284-101717154
131
PABP1_HUMAN
563-606
44
1
A:563-606
44
1.13a
ENST00000318607
13a
ENSE00001088716
chr8:
101716618-101716525
94
PABP1_HUMAN
607-636
30
1
A:607-622
16
1.14e
ENST00000318607
14e
ENSE00001378950
chr8:
101715587-101715144
444
PABP1_HUMAN
-
0
0
-
-
2.1b
ENST00000398473
1b
ENSE00002135853
chr12:
50794682-50794811
130
LARP4_HUMAN
1-6
6
0
-
-
2.5a
ENST00000398473
5a
ENSE00001795696
chr12:
50821545-50821692
148
LARP4_HUMAN
7-56
50
1
B:15-25
11
2.6d
ENST00000398473
6d
ENSE00001593830
chr12:
50822718-50822873
156
LARP4_HUMAN
56-108
53
0
-
-
2.7
ENST00000398473
7
ENSE00001655473
chr12:
50824278-50824353
76
LARP4_HUMAN
108-133
26
0
-
-
2.8b
ENST00000398473
8b
ENSE00001778960
chr12:
50829271-50829407
137
LARP4_HUMAN
133-179
47
0
-
-
2.9a
ENST00000398473
9a
ENSE00001722264
chr12:
50831518-50831621
104
LARP4_HUMAN
179-213
35
0
-
-
2.10a
ENST00000398473
10a
ENSE00001768656
chr12:
50834222-50834332
111
LARP4_HUMAN
214-250
37
0
-
-
2.11a
ENST00000398473
11a
ENSE00001696119
chr12:
50835373-50835426
54
LARP4_HUMAN
251-268
18
0
-
-
2.12a
ENST00000398473
12a
ENSE00001631045
chr12:
50847243-50847455
213
LARP4_HUMAN
269-339
71
0
-
-
2.13a
ENST00000398473
13a
ENSE00001707001
chr12:
50848097-50848200
104
LARP4_HUMAN
340-374
35
0
-
-
2.14a
ENST00000398473
14a
ENSE00001631570
chr12:
50854918-50855130
213
LARP4_HUMAN
374-445
72
0
-
-
2.15
ENST00000398473
15
ENSE00001681874
chr12:
50856365-50856413
49
LARP4_HUMAN
445-461
17
0
-
-
2.16
ENST00000398473
16
ENSE00001745658
chr12:
50860742-50860903
162
LARP4_HUMAN
462-515
54
0
-
-
2.17
ENST00000398473
17
ENSE00001714506
chr12:
50867198-50867319
122
LARP4_HUMAN
516-556
41
0
-
-
2.18b
ENST00000398473
18b
ENSE00001230497
chr12:
50867782-50867950
169
LARP4_HUMAN
556-612
57
0
-
-
2.19f
ENST00000398473
19f
ENSE00002105635
chr12:
50869309-50873787
4479
LARP4_HUMAN
613-724
112
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PABP_3pknA01 (A:544-614)
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(
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(
)
(
)
Clan
:
no clan defined [family: PABP]
(14)
Family
:
PABP
(14)
Homo sapiens (Human)
(13)
1a
PABP-3pknA01
A:544-614
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