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3PKI
Biol. Unit 6
Info
Asym.Unit (300 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (54 KB)
Biol.Unit 5 (53 KB)
Biol.Unit 6 (53 KB)
Biol.Unit 7 (149 KB)
Biol.Unit 8 (146 KB)
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(1)
Title
:
HUMAN SIRT6 CRYSTAL STRUCTURE IN COMPLEX WITH ADP RIBOSE
Authors
:
P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, A. Bochk C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)
Date
:
11 Nov 10 (Deposition) - 26 Jan 11 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C (1x)
Biol. Unit 8: D,E,F (1x)
Keywords
:
Sirt6, Adp Ribose, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
[
close entry info
]
Hetero Components
(3, 9)
Info
All Hetero Components
1a: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6a)
1b: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6b)
1c: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6c)
1d: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6d)
1e: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6e)
1f: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (AR6f)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
3s: UNKNOWN ATOM OR ION (UNXs)
3t: UNKNOWN ATOM OR ION (UNXt)
3u: UNKNOWN ATOM OR ION (UNXu)
3v: UNKNOWN ATOM OR ION (UNXv)
3w: UNKNOWN ATOM OR ION (UNXw)
3x: UNKNOWN ATOM OR ION (UNXx)
3y: UNKNOWN ATOM OR ION (UNXy)
3z: UNKNOWN ATOM OR ION (UNXz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AR6
1
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE
2
SO4
2
Ligand/Ion
SULFATE ION
3
UNX
6
Ligand/Ion
UNKNOWN ATOM OR ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(9, 9)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC2 (SOFTWARE)
4: CC3 (SOFTWARE)
5: DC3 (SOFTWARE)
6: DC5 (SOFTWARE)
7: DC6 (SOFTWARE)
8: DC7 (SOFTWARE)
9: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ARG A:218 , PRO A:219 , ASN A:222 , ALA F:226 , ARG F:229
BINDING SITE FOR RESIDUE SO4 A 360
2
AC9
SOFTWARE
GLY B:50 , ALA B:51 , GLY B:52 , THR B:55 , ASP B:61 , PHE B:62 , ARG B:63 , TRP B:69 , GLN B:111 , HIS B:131 , GLY B:212 , THR B:213 , SER B:214 , ILE B:217 , ASN B:238 , LEU B:239 , GLN B:240 , GLY B:254 , TYR B:255 , VAL B:256 , HOH B:375 , HOH B:377 , HOH B:432 , HOH B:444 , ASP F:81 , HOH F:432
BINDING SITE FOR RESIDUE AR6 B 2000
3
BC2
SOFTWARE
HIS B:66 , LYS B:79 , HOH B:392 , HOH B:421 , HOH B:916 , HIS F:66 , LYS F:79 , HOH F:641
BINDING SITE FOR RESIDUE SO4 B 361
4
CC3
SOFTWARE
GLY D:153 , ARG D:162 , LYS F:294
BINDING SITE FOR RESIDUE SO4 D 357
5
DC3
SOFTWARE
LYS E:294 , VAL F:152 , GLY F:153 , THR F:160 , ARG F:162
BINDING SITE FOR RESIDUE SO4 E 360
6
DC5
SOFTWARE
CYS F:139 , CYS F:142 , CYS F:164 , CYS F:175
BINDING SITE FOR RESIDUE ZN F 1000
7
DC6
SOFTWARE
ASP B:81 , HOH B:401 , GLY F:50 , ALA F:51 , GLY F:52 , THR F:55 , ASP F:61 , PHE F:62 , ARG F:63 , TRP F:69 , GLN F:111 , HIS F:131 , GLY F:212 , THR F:213 , SER F:214 , ILE F:217 , ASN F:238 , LEU F:239 , GLN F:240 , GLY F:254 , TYR F:255 , VAL F:256 , HOH F:372 , HOH F:381 , HOH F:401 , HOH F:701
BINDING SITE FOR RESIDUE AR6 F 2000
8
DC7
SOFTWARE
ARG B:88 , ALA B:273 , TRP B:274 , ARG F:88 , ALA F:273 , TRP F:274 , HOH F:637 , HOH F:674
BINDING SITE FOR RESIDUE SO4 F 360
9
DC8
SOFTWARE
LYS A:243 , HIS A:244 , ARG A:246 , HIS A:247 , ARG D:170 , ARG F:230 , HOH F:409
BINDING SITE FOR RESIDUE SO4 F 361
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017154 (S44N, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017154
S
46
N
SIR6_HUMAN
Polymorphism
352493
F
S
44
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (F:33-272)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR6_HUMAN
35-274
1
-
-
-
-
-
F:33-272
[
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]
Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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(currently selected atoms:
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)
Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain F
Asymmetric Unit 1
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