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3PK1
Biol. Unit 2
Info
Asym.Unit (120 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MCL-1 IN COMPLEX WITH THE BAXBH3 DOMAIN
Authors
:
P. E. Czabotar, P. M. Colman
Date
:
11 Nov 10 (Deposition) - 29 Dec 10 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Bcl-2 Family Fold, Regulation Of Apoptosis, Bax, Mitochondria, Apoptosis-Apoptosis Regulator Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. E. Czabotar, E. F. Lee, G. V. Thompson, A. Z. Wardak, W. D. Fairlie, P. M. Colman
Mutation To Bax Beyond The Bh3 Domain Disrupts Interactions With Pro-Survival Proteins And Promotes Apoptosis
J. Biol. Chem. V. 286 7123 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:225 , HOH C:21 , HIS C:277 , HOH C:327
BINDING SITE FOR RESIDUE CD A 1
02
AC2
SOFTWARE
HIS A:277 , HOH C:25 , GLU C:225
BINDING SITE FOR RESIDUE CD A 2
03
AC3
SOFTWARE
HOH A:23 , HIS A:224 , GLU B:69 , ASP C:304
BINDING SITE FOR RESIDUE CD A 5
04
AC8
SOFTWARE
GLU A:180 , GLU C:284
BINDING SITE FOR RESIDUE CD A 18
05
BC2
SOFTWARE
ASP A:304 , HOH C:22 , HIS C:224 , GLU D:69
BINDING SITE FOR RESIDUE CD C 3
06
BC3
SOFTWARE
HOH C:34 , HIS C:252
BINDING SITE FOR RESIDUE CD C 4
07
BC4
SOFTWARE
CD C:11 , CD C:15
BINDING SITE FOR RESIDUE CD C 10
08
BC5
SOFTWARE
CD C:10 , CYS C:286
BINDING SITE FOR RESIDUE CD C 11
09
BC6
SOFTWARE
CD C:10 , GLU C:240
BINDING SITE FOR RESIDUE CD C 15
10
BC7
SOFTWARE
GLU C:240 , ASP C:241
BINDING SITE FOR RESIDUE CD C 16
11
BC8
SOFTWARE
CYS D:62
BINDING SITE FOR RESIDUE CD D 6
12
BC9
SOFTWARE
CYS D:62
BINDING SITE FOR RESIDUE CD D 9
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_007809 (G67R, chain D, )
2: VAR_024021 (S173D, chain C, )
3: VAR_024022 (A227V, chain C, )
4: VAR_054157 (M231L, chain C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007809
G
67
R
BAX_HUMAN
Unclassified
---
D
G
67
R
2
UniProt
VAR_024021
E
173
D
MCL1_HUMAN
Polymorphism
2737820
C
S
173
D
3
UniProt
VAR_024022
A
227
V
MCL1_HUMAN
Polymorphism
11580946
C
A
227
V
4
UniProt
VAR_054157
M
231
L
MCL1_HUMAN
Polymorphism
---
C
M
231
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: BH3 (C:209-223)
2: BCL2_FAMILY (C:213-314)
3: BH1 (C:253-272)
4: BH2 (C:305-316)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
BAX_HUMAN
59-73
1
-
D:59-73
MCL1_HUMAN
209-223
1
-
C:209-223
2
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
BAX_HUMAN
63-160
1
-
D:63-80
MCL1_HUMAN
213-314
1
-
C:213-314
3
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
MCL1_HUMAN
253-272
1
-
C:253-272
4
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
MCL1_HUMAN
305-316
1
-
C:305-316
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Bcl_2_3pk1D01 (D:63-80)
1b: PFAM_Bcl_2_3pk1D02 (D:63-80)
1c: PFAM_Bcl_2_3pk1C01 (C:213-312)
1d: PFAM_Bcl_2_3pk1C02 (C:213-312)
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Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-3pk1D01
D:63-80
1b
Bcl-2-3pk1D02
D:63-80
1c
Bcl-2-3pk1C01
C:213-312
1d
Bcl-2-3pk1C02
C:213-312
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Chain D
Asymmetric Unit 1
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Asym.Unit (120 KB)
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