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3PK0
Biol. Unit 2
Info
Asym.Unit (328 KB)
Biol.Unit 1 (322 KB)
Biol.Unit 2 (320 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR FROM MYCOBACTERIUM SMEGMATIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
10 Nov 10 (Deposition) - 24 Nov 10 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (2x)
Biol. Unit 2: B,D (2x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
8: BC8 (SOFTWARE)
9: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
TYR B:151 , HOH B:341 , HOH B:467 , HOH B:879
BINDING SITE FOR RESIDUE GOL B 267
2
AC7
SOFTWARE
ASP B:97 , HOH B:291 , HOH B:331 , HOH B:772 , ASP D:97 , HOH D:327 , HOH D:658
BINDING SITE FOR RESIDUE CA B 270
3
AC8
SOFTWARE
ARG B:169 , CL D:275
BINDING SITE FOR RESIDUE CL B 275
4
AC9
SOFTWARE
ASP B:51 , GLY B:54 , GLY B:56 , HOH B:319 , HOH B:431
BINDING SITE FOR RESIDUE CA B 280
5
BC1
SOFTWARE
ASN B:91 , ALA B:92 , GLY B:93 , THR B:141 , TYR B:157 , LYS B:161 , HOH B:296
BINDING SITE FOR RESIDUE GOL B 285
6
BC6
SOFTWARE
HOH D:514 , HOH D:828 , HOH D:903
BINDING SITE FOR RESIDUE GOL D 267
7
BC7
SOFTWARE
CL B:275 , LEU D:165 , ARG D:169
BINDING SITE FOR RESIDUE CL D 275
8
BC8
SOFTWARE
PRO C:-2 , HOH C:509 , ASP D:51 , GLY D:54 , GLY D:56 , HOH D:315
BINDING SITE FOR RESIDUE CA D 280
9
BC9
SOFTWARE
ASN D:91 , ALA D:92 , GLY D:93 , THR D:141 , TYR D:157 , LYS D:161 , HOH D:344
BINDING SITE FOR RESIDUE GOL D 285
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3pk0a_ (A:)
1b: SCOP_d3pk0b_ (B:)
1c: SCOP_d3pk0c_ (C:)
1d: SCOP_d3pk0d_ (D:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Mycobacterium smegmatis [TaxId: 246196]
(4)
1a
d3pk0a_
A:
1b
d3pk0b_
B:
1c
d3pk0c_
C:
1d
d3pk0d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_3pk0D01 (D:7-176)
1b: PFAM_adh_short_3pk0D02 (D:7-176)
1c: PFAM_adh_short_3pk0D03 (D:7-176)
1d: PFAM_adh_short_3pk0D04 (D:7-176)
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Clans
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
(2)
1a
adh_short-3pk0D01
D:7-176
1b
adh_short-3pk0D02
D:7-176
1c
adh_short-3pk0D03
D:7-176
1d
adh_short-3pk0D04
D:7-176
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (328 KB)
Header - Asym.Unit
Biol.Unit 1 (322 KB)
Header - Biol.Unit 1
Biol.Unit 2 (320 KB)
Header - Biol.Unit 2
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