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3PK0
Biol. Unit 1
Info
Asym.Unit (328 KB)
Biol.Unit 1 (322 KB)
Biol.Unit 2 (320 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR FROM MYCOBACTERIUM SMEGMATIS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
10 Nov 10 (Deposition) - 24 Nov 10 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (2x)
Biol. Unit 2: B,D (2x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
6
Ligand/Ion
GLYCEROL
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:95 , TRP A:154 , HOH A:340 , HOH A:870
BINDING SITE FOR RESIDUE PEG A 265
02
AC2
SOFTWARE
ASP A:97 , HOH A:291 , HOH A:598 , ASP C:97 , HOH C:302
BINDING SITE FOR RESIDUE CA A 270
03
AC3
SOFTWARE
LEU A:165 , ARG A:169 , CL C:275
BINDING SITE FOR RESIDUE CL A 275
04
AC4
SOFTWARE
ASP A:51 , GLY A:54 , GLY A:56 , HOH A:283 , HOH A:319
BINDING SITE FOR RESIDUE CA A 280
05
AC5
SOFTWARE
ASN A:91 , GLY A:93 , THR A:141 , TYR A:157 , LYS A:161
BINDING SITE FOR RESIDUE GOL A 285
06
BC2
SOFTWARE
HOH C:889
BINDING SITE FOR RESIDUE GOL C 267
07
BC3
SOFTWARE
CL A:275 , ARG C:169
BINDING SITE FOR RESIDUE CL C 275
08
BC4
SOFTWARE
ASP C:51 , GLY C:54 , GLY C:56 , HOH C:311 , HOH C:532
BINDING SITE FOR RESIDUE CA C 280
09
BC5
SOFTWARE
ASN C:91 , ALA C:92 , GLY C:93 , THR C:141 , TYR C:157 , LYS C:161 , HOH C:330
BINDING SITE FOR RESIDUE GOL C 285
10
BC8
SOFTWARE
PRO C:-2 , HOH C:509 , ASP D:51 , GLY D:54 , GLY D:56 , HOH D:315
BINDING SITE FOR RESIDUE CA D 280
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3pk0a_ (A:)
1b: SCOP_d3pk0b_ (B:)
1c: SCOP_d3pk0c_ (C:)
1d: SCOP_d3pk0d_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Mycobacterium smegmatis [TaxId: 246196]
(4)
1a
d3pk0a_
A:
1b
d3pk0b_
B:
1c
d3pk0c_
C:
1d
d3pk0d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_3pk0D01 (D:7-176)
1b: PFAM_adh_short_3pk0D02 (D:7-176)
1c: PFAM_adh_short_3pk0D03 (D:7-176)
1d: PFAM_adh_short_3pk0D04 (D:7-176)
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Clans
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Organisms
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
(2)
1a
adh_short-3pk0D01
D:7-176
1b
adh_short-3pk0D02
D:7-176
1c
adh_short-3pk0D03
D:7-176
1d
adh_short-3pk0D04
D:7-176
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (328 KB)
Header - Asym.Unit
Biol.Unit 1 (322 KB)
Header - Biol.Unit 1
Biol.Unit 2 (320 KB)
Header - Biol.Unit 2
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