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Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF POLYPORUS SQUAMOSUS LECTIN BOUND TO HUMAN-TYPE INFLUENZA-BINDING EPITOPE NEU5ACA2-6GALB1-4GLCNAC
Authors
:
R. Kadirvelraj, R. J. Woods
Date
:
04 Nov 10 (Deposition) - 06 Jul 11 (Release) - 06 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta Trefoil, Saccharide Binding Lectin, 2, 6-Sialyl-Lactosamine, Sugar Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Kadirvelraj, O. C. Grant, I. J. Goldstein, H. C. Winter, H. Tateno, E. Fadda, R. J. Woods
Structure And Binding Analysis Of Polyporus Squamosus Lecti In Complex With The Neu5Ac{Alpha}2-6Gal{Beta}1-4Glcnac Human-Type Influenza Receptor.
Glycobiology V. 21 973 2011
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
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No.
Name
Count
Type
Full Name
1
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
2
Ligand/Ion
O-SIALIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:75 , HIS A:76 , GAL A:302 , SIA A:303 , HOH A:552
BINDING SITE FOR RESIDUE NAG A 301
2
AC2
SOFTWARE
ASP A:72 , LEU A:73 , ALA A:74 , GLY A:75 , HIS A:76 , TYR A:87 , ASN A:94 , NAG A:301 , SIA A:303 , HOH A:339
BINDING SITE FOR RESIDUE GAL A 302
3
AC3
SOFTWARE
ASN A:30 , SER A:32 , NAG A:301 , GAL A:302 , HOH A:328 , HOH A:491
BINDING SITE FOR RESIDUE SIA A 303
4
AC4
SOFTWARE
ASP B:185 , GAL B:302 , SIA B:303 , HOH B:496
BINDING SITE FOR RESIDUE NAG B 301
5
AC5
SOFTWARE
ASP B:72 , ALA B:74 , GLY B:75 , HIS B:76 , TYR B:87 , ASN B:94 , ASP B:185 , NAG B:301 , SIA B:303 , HOH B:409
BINDING SITE FOR RESIDUE GAL B 302
6
AC6
SOFTWARE
ASN B:30 , LYS B:31 , SER B:32 , NAG B:301 , GAL B:302 , HOH B:453
BINDING SITE FOR RESIDUE SIA B 303
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3phza1 (A:2-148)
1b: SCOP_d3phzb1 (B:2-148)
2a: SCOP_d3phza2 (A:149-286)
2b: SCOP_d3phzb2 (B:149-286)
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Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Ricin B-like lectins
(91)
Family
:
automated matches
(21)
Protein domain
:
automated matches
(21)
Polyporus squamosus [TaxId: 5640]
(1)
1a
d3phza1
A:2-148
1b
d3phzb1
B:2-148
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Polyporus squamosus [TaxId: 5640]
(1)
2a
d3phza2
A:149-286
2b
d3phzb2
B:149-286
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RicinB_lectin_2_3phzB01 (B:45-147)
1b: PFAM_RicinB_lectin_2_3phzB02 (B:45-147)
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Clan
:
Trefoil
(131)
Family
:
RicinB_lectin_2
(5)
Polyporus squamosus
(1)
1a
RicinB_lectin_2-3phzB01
B:45-147
1b
RicinB_lectin_2-3phzB02
B:45-147
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