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3PGX
Asym. Unit
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Asym.Unit (348 KB)
Biol.Unit 1 (341 KB)
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Title
:
CRYSTAL STRUCTURE OF A PUTATIVE CARVEOL DEHYDROGENASE FROM MYCOBACTERIUM PARATUBERCULOSIS BOUND TO NICOTINAMIDE ADENINE DINUCLEOTIDE
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
02 Nov 10 (Deposition) - 24 Nov 10 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Carveol Dehydrogenase, Short Chain Dehydrogenase/Reductase Superfamily, Oxidoreductase, Nicotinamide Adenine Dinucleotide, Nad, Putative Uncharacterized Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. H. Haft, P. G. Pierce, S. J. Mayclin, A. Sullivan, A. S. Gardberg, J. Abendroth, D. W. Begley, I. Q. Phan, B. L. Staker, P. J. Myler, V. M. Marathias, D. D. Lorimer, T. E. Edwards
Mycofactocin-Associated Mycobacterial Dehydrogenases With Non-Exchangeable Nad Cofactors.
Sci Rep V. 7 41074 2017
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
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Label:
No.
Name
Count
Type
Full Name
1
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:18 , ARG A:21 , GLY A:22 , GLN A:23 , ASP A:42 , ILE A:43 , VAL A:47 , ALA A:56 , LEU A:80 , ASP A:81 , VAL A:82 , ASN A:108 , ALA A:109 , GLY A:110 , VAL A:111 , VAL A:131 , VAL A:159 , SER A:160 , TYR A:174 , LYS A:178 , PRO A:204 , SER A:206 , VAL A:207 , THR A:209 , PRO A:210 , MET A:211 , ILE A:212 , HOH A:298 , HOH A:303 , HOH A:311 , HOH A:397
BINDING SITE FOR RESIDUE NAD A 277
2
AC2
SOFTWARE
GLY B:18 , ARG B:21 , GLN B:23 , ASP B:42 , ILE B:43 , VAL B:47 , ALA B:56 , LEU B:80 , ASP B:81 , VAL B:82 , ASN B:108 , ALA B:109 , GLY B:110 , VAL B:111 , VAL B:131 , VAL B:159 , SER B:160 , SER B:161 , TYR B:174 , LYS B:178 , PRO B:204 , SER B:206 , VAL B:207 , THR B:209 , PRO B:210 , MET B:211 , ILE B:212 , HOH B:284 , HOH B:292 , HOH B:302 , HOH B:323 , HOH B:503
BINDING SITE FOR RESIDUE NAD B 277
3
AC3
SOFTWARE
GLY C:18 , ARG C:21 , GLY C:22 , GLN C:23 , ASP C:42 , ILE C:43 , VAL C:47 , ALA C:56 , LEU C:80 , ASP C:81 , VAL C:82 , ASN C:108 , ALA C:109 , GLY C:110 , VAL C:111 , VAL C:131 , VAL C:159 , SER C:160 , SER C:161 , TYR C:174 , LYS C:178 , PRO C:204 , SER C:206 , VAL C:207 , THR C:209 , PRO C:210 , MET C:211 , ILE C:212 , HOH C:313 , HOH C:326 , HOH C:377 , HOH C:748 , HOH C:753
BINDING SITE FOR RESIDUE NAD C 277
4
AC4
SOFTWARE
GLY D:18 , ARG D:21 , GLY D:22 , GLN D:23 , ASP D:42 , ILE D:43 , VAL D:47 , ALA D:56 , LEU D:80 , ASP D:81 , VAL D:82 , ASN D:108 , ALA D:109 , GLY D:110 , VAL D:111 , VAL D:131 , VAL D:159 , SER D:160 , SER D:161 , TYR D:174 , LYS D:178 , PRO D:204 , SER D:206 , VAL D:207 , THR D:209 , PRO D:210 , MET D:211 , ILE D:212 , HOH D:278 , HOH D:301 , HOH D:369 , HOH D:752 , HOH D:782
BINDING SITE FOR RESIDUE NAD D 277
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:161-189,B:161-189,C:161-189,D:16...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
Y4146_MYCPA
160-188
4
A:161-189
B:161-189
C:161-189
D:161-189
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3pgxa_ (A:)
1b: SCOP_d3pgxb_ (B:)
1c: SCOP_d3pgxc_ (C:)
1d: SCOP_d3pgxd_ (D:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Mycobacterium avium [TaxId: 1770]
(2)
1a
d3pgxa_
A:
1b
d3pgxb_
B:
1c
d3pgxc_
C:
1d
d3pgxd_
D:
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (348 KB)
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