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Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN U1 SNRNP
Authors
:
G. Weber, S. Trowitzsch, B. Kastner, R. Luehrmann, M. C. Wahl
Date
:
02 Nov 10 (Deposition) - 29 Dec 10 (Release) - 29 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.40
Chains
:
Asym. Unit : A,B,D,E,F,G,H,I,J,L,M,N,P,Q,R,S,U,V,W,X,Y,Z
Biol. Unit 1: A,B,D,E,F,G,R,S,X,Y,Z (1x)
Biol. Unit 2: H,I,J,L,M,N,P,Q,U,V,W (1x)
Keywords
:
Protein-Rna Complex, U1 Snrna, Sm Fold, Sm Core, Rrm, Splicing, Mrna, Snrnps, Splicing Factors, Splicing-Dna-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Weber, S. Trowitzsch, B. Kastner, R. Luhrmann, M. C. Wahl
Functional Organization Of The Sm Core In The Crystal Structure Of Human U1 Snrnp.
Embo J. V. 29 4172 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(6, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_069619 (G45S, chain E/H, )
2: VAR_073380 (N55S, chain B, )
3: VAR_073381 (N55T, chain B, )
4: VAR_073382 (S56R, chain B, )
5: VAR_073383 (S56W, chain B, )
6: VAR_052274 (S79P, chain B/Q, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069619
G
45
S
RUXE_HUMAN
Disease (HYPT11)
---
E/H
G
45
S
2
UniProt
VAR_073380
N
55
S
RSMB_HUMAN
Disease (CCMS)
---
B
N
55
S
3
UniProt
VAR_073381
N
55
T
RSMB_HUMAN
Disease (CCMS)
---
B
N
55
T
4
UniProt
VAR_073382
S
56
R
RSMB_HUMAN
Disease (CCMS)
---
B
S
56
R
5
UniProt
VAR_073383
S
56
W
RSMB_HUMAN
Disease (CCMS)
---
B
S
56
W
6
UniProt
VAR_052274
S
79
P
RSMB_HUMAN
Polymorphism
11545672
B/Q
S
79
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RRM (A:10-89,P:10-89|-,L:103-181,S:103-...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SNRPA_HUMAN
10-89
208-282
2
A:10-89
P:10-89
-
RU17_HUMAN
103-181
2
L:103-181
S:103-181
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Exons
(10, 20)
Info
All Exons
Exon 1.2a (W:3-42 | Z:5-42)
Exon 1.3b (W:43-94 | Z:43-84)
Exon 2.1 (A:5-25 | P:2-25)
Exon 2.2 (A:25-82 | P:25-82)
Exon 2.3 (A:83-112 | P:83-114)
Exon 3.1 (U:1-5 | X:1-5)
Exon 3.2 (U:5-31 | X:5-31)
Exon 3.3 (U:31-85 | X:31-85)
Exon 4.3a (V:2-61 | Y:2-61)
Exon 4.4 (V:61-117 (gaps) | Y:61-112)
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All Exon Boundaries
01: Boundary 1.1a/1.2a
02: Boundary 1.2a/1.3b
03: Boundary 1.3b/1.4c
04: Boundary -/2.1
05: Boundary 2.1/2.2
06: Boundary 2.2/2.3
07: Boundary 2.3/2.4
08: Boundary -/3.1
09: Boundary 3.1/3.2
10: Boundary 3.2/3.3
11: Boundary 3.3/3.4
12: Boundary 4.1/4.3a
13: Boundary 4.3a/4.4
14: Boundary 4.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215829
1a
ENSE00001948969
chr22:
24951471-24952039
569
SMD3_HUMAN
-
0
0
-
-
1.2a
ENST00000215829
2a
ENSE00000879568
chr22:
24953625-24953768
144
SMD3_HUMAN
1-42
42
2
W:3-42
Z:5-42
40
38
1.3b
ENST00000215829
3b
ENSE00000651723
chr22:
24963952-24964144
193
SMD3_HUMAN
43-107
65
2
W:43-94
Z:43-84
52
42
1.4c
ENST00000215829
4c
ENSE00001402429
chr22:
24967884-24968740
857
SMD3_HUMAN
107-126
20
0
-
-
2.1
ENST00000243563
1
ENSE00001052136
chr19:
41256779-41257386
608
SNRPA_HUMAN
1-25
25
2
A:5-25
P:2-25
21
24
2.2
ENST00000243563
2
ENSE00000707951
chr19:
41263237-41263409
173
SNRPA_HUMAN
25-82
58
2
A:25-82
P:25-82
58
58
2.3
ENST00000243563
3
ENSE00000707956
chr19:
41265336-41265515
180
SNRPA_HUMAN
83-142
60
2
A:83-112
P:83-114
30
32
2.4
ENST00000243563
4
ENSE00000707961
chr19:
41268806-41268979
174
SNRPA_HUMAN
143-200
58
0
-
-
2.5
ENST00000243563
5
ENSE00000842333
chr19:
41269492-41269580
89
SNRPA_HUMAN
201-230
30
0
-
-
2.6
ENST00000243563
6
ENSE00000842334
chr19:
41270913-41271290
378
SNRPA_HUMAN
230-282
53
0
-
-
3.1
ENST00000300413
1
ENSE00001137497
chr18:
19192260-19192404
145
SMD1_HUMAN
1-5
5
2
U:1-5
X:1-5
5
5
3.2
ENST00000300413
2
ENSE00001109516
chr18:
19202686-19202762
77
SMD1_HUMAN
5-31
27
2
U:5-31
X:5-31
27
27
3.3
ENST00000300413
3
ENSE00001109513
chr18:
19203709-19203900
192
SMD1_HUMAN
31-95
65
2
U:31-85
X:31-85
55
55
3.4
ENST00000300413
4
ENSE00001109508
chr18:
19209023-19210204
1182
SMD1_HUMAN
95-119
25
0
-
-
4.1
ENST00000342669
1
ENSE00002150353
chr19:
46195442-46195145
298
SMD2_HUMAN
1-1
1
0
-
-
4.3a
ENST00000342669
3a
ENSE00001371016
chr19:
46191824-46191645
180
SMD2_HUMAN
1-61
61
2
V:2-61
Y:2-61
60
60
4.4
ENST00000342669
4
ENSE00000858249
chr19:
46190985-46190719
267
SMD2_HUMAN
61-118
58
2
V:61-117 (gaps)
Y:61-112
57
52
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Asym.Unit (61 KB)
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