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3PGS
Asym. Unit
Info
Asym.Unit (315 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (154 KB)
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(1)
Title
:
PHE3GLY MUTANT OF ECFADL
Authors
:
B. Van Den Berg, B. W. Lepore
Date
:
02 Nov 10 (Deposition) - 25 May 11 (Release) - 06 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel Outer Membrane, Lipid Transport, Outer Membrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Lepore, M. Indic, H. Pham, E. M. Hearn, D. R. Patel, B. Van Den Ber
From The Cover: Ligand-Gated Diffusion Across The Bacterial Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 10121 2011
[
close entry info
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
3a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
3b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
3c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
3d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
3e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
3f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
3g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
3h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
3i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
3j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
3k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
3l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
3m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
4a: CALCIUM ION (CAa)
5a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
5b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
5c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
5d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
5e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
5f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
5g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
5h: LAURYL DIMETHYLAMINE-N-OXIDE (LDAh)
5i: LAURYL DIMETHYLAMINE-N-OXIDE (LDAi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
2
ACT
2
Ligand/Ion
ACETATE ION
3
C8E
13
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
4
CA
1
Ligand/Ion
CALCIUM ION
5
LDA
9
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:423 , HIS A:425 , ASP B:53 , HOH B:477 , HOH B:534 , HOH B:649
BINDING SITE FOR RESIDUE CA A 428
02
AC2
SOFTWARE
THR A:187 , ASN A:244 , ALA A:246 , TYR A:250 , C8E B:435
BINDING SITE FOR RESIDUE C8E A 429
03
AC3
SOFTWARE
VAL A:387 , TRP A:411 , PHE B:421
BINDING SITE FOR RESIDUE C8E A 430
04
AC4
SOFTWARE
GLN A:169 , GLN A:180 , GLN B:180 , C8E B:435 , HOH B:640
BINDING SITE FOR RESIDUE LDA A 431
05
AC5
SOFTWARE
TRP A:209 , TYR A:227 , TRP A:275
BINDING SITE FOR RESIDUE LDA A 432
06
AC6
SOFTWARE
GLN A:180 , ILE B:170 , C8E B:435
BINDING SITE FOR RESIDUE LDA A 433
07
AC7
SOFTWARE
GLY A:48 , MET A:82 , HOH B:599
BINDING SITE FOR RESIDUE LDA A 434
08
AC8
SOFTWARE
ALA A:148
BINDING SITE FOR RESIDUE LDA A 436
09
AC9
SOFTWARE
GLY A:132 , ALA A:133
BINDING SITE FOR RESIDUE LDA A 437
10
BC1
SOFTWARE
ALA A:153 , ILE A:155 , ASN A:201 , PHE A:235 , ASN A:238 , TYR A:239 , GLY A:265 , LEU A:269 , ASN A:270 , TRP A:298 , PHE A:301
BINDING SITE FOR RESIDUE C8E A 438
11
BC2
SOFTWARE
ALA A:77 , PRO A:80 , SER A:100 , GLY A:103 , LEU A:123 , THR A:125 , ARG A:366 , MET A:390 , ALA A:410 , HOH A:583 , HOH A:662 , HOH A:783
BINDING SITE FOR RESIDUE C8E A 439
12
BC3
SOFTWARE
GLN A:4 , ASN A:6 , GLU A:7 , TRP A:368 , HOH A:772
BINDING SITE FOR RESIDUE ACT A 1428
13
BC4
SOFTWARE
LEU A:162 , GLY A:163 , GLN A:169 , ILE A:191 , C8E A:442 , HOH A:775
BINDING SITE FOR RESIDUE C8E A 440
14
BC5
SOFTWARE
ASP A:336 , TRP A:339 , VAL A:383 , PHE B:207 , LDA B:429 , HOH B:550
BINDING SITE FOR RESIDUE C8E A 441
15
BC6
SOFTWARE
VAL A:166 , GLN A:169 , PRO A:401 , C8E A:440 , C8E A:443 , HOH A:707 , GLY B:251
BINDING SITE FOR RESIDUE C8E A 442
16
BC7
SOFTWARE
GLY A:251 , C8E A:442 , VAL B:166 , GLN B:169 , C8E B:435
BINDING SITE FOR RESIDUE C8E A 443
17
BC8
SOFTWARE
C8E A:441 , ALA B:96 , ILE B:98
BINDING SITE FOR RESIDUE LDA B 429
18
BC9
SOFTWARE
LEU B:225 , TYR B:227 , TRP B:275
BINDING SITE FOR RESIDUE LDA B 430
19
CC1
SOFTWARE
GLY B:2 , ALA B:153 , LEU B:200 , ASN B:201 , GLY B:202 , PHE B:235 , GLY B:237 , ASN B:238 , GLY B:265 , LEU B:269 , ASN B:270 , LEU B:271 , TRP B:298 , PHE B:301 , ALA B:306 , ILE B:361
BINDING SITE FOR RESIDUE C8E B 431
20
CC2
SOFTWARE
ILE B:52 , ALA B:77 , TRP B:78 , PRO B:80 , SER B:100 , LEU B:104 , THR B:125 , MET B:126 , LYS B:409 , ALA B:410 , HOH B:451 , HOH B:619 , HOH B:756 , ACT B:1428
BINDING SITE FOR RESIDUE C8E B 432
21
CC3
SOFTWARE
ALA A:49 , TRP A:78 , VAL A:385 , PHE A:413 , GLY A:414 , THR A:415 , PHE B:92 , GLY B:93 , TRP B:94 , GLY B:132 , ALA B:133 , HOH B:599
BINDING SITE FOR RESIDUE C8E B 433
22
CC4
SOFTWARE
GLN B:4 , ASN B:6 , GLU B:7 , ARG B:366 , TRP B:368 , C8E B:432
BINDING SITE FOR RESIDUE ACT B 1428
23
CC5
SOFTWARE
GLN B:169 , ILE B:191 , LEU B:243 , PHE B:247 , HOH B:488 , HOH B:624
BINDING SITE FOR RESIDUE C8E B 434
24
CC6
SOFTWARE
C8E A:429 , LDA A:431 , LDA A:433 , C8E A:443 , THR B:187 , ASN B:244 , PHE B:247 , HOH B:734
BINDING SITE FOR RESIDUE C8E B 435
25
CC7
SOFTWARE
ASP B:218 , ASN B:221 , VAL B:277 , ASN B:281 , ILE B:289 , TYR B:291 , ILE B:327
BINDING SITE FOR RESIDUE 2PE B 436
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3pgsa_ (A:)
1b: SCOP_d3pgsb_ (B:)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Outer membrane protein transport protein
(10)
Protein domain
:
automated matches
(8)
Escherichia coli K-12 [TaxId: 83333]
(5)
1a
d3pgsa_
A:
1b
d3pgsb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Toluene_X_3pgsB01 (B:1-421)
1b: PFAM_Toluene_X_3pgsB02 (B:1-421)
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(
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(
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(
)
(
)
Clan
:
MBB
(97)
Family
:
Toluene_X
(12)
Escherichia coli (strain K12)
(12)
1a
Toluene_X-3pgsB01
B:1-421
1b
Toluene_X-3pgsB02
B:1-421
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