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3PGK
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
THE STRUCTURE OF YEAST PHOSPHOGLYCERATE KINASE AT 0.25 NM RESOLUTION
Authors
:
P. J. Shaw, N. P. Walker, H. C. Watson
Date
:
15 Jul 82 (Deposition) - 24 Sep 82 (Release) - 06 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphotransferase(Carboxyl As Acceptor), Transferase
(Keyword Search:
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Reference
:
H. C. Watson, N. P. Walker, P. J. Shaw, T. N. Bryant, P. L. Wendell, L. A. Fothergill, R. E. Perkins, S. C. Conroy, M. J. Dobson, M. F. Tuite
Sequence And Structure Of Yeast Phosphoglycerate Kinase.
Embo J. V. 1 1635 1982
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: 3-PHOSPHOGLYCERIC ACID (3PGa)
2a: ACETYL GROUP (ACEa)
3a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
4a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
3PG
1
Ligand/Ion
3-PHOSPHOGLYCERIC ACID
2
ACE
1
Mod. Amino Acid
ACETYL GROUP
3
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:372 , ATP A:417
BINDING SITE FOR RESIDUE MG A 416
2
AC2
SOFTWARE
GLY A:211 , ALA A:212 , LYS A:213 , LYS A:217 , ILE A:250 , ILE A:285 , LYS A:301 , GLU A:302 , GLY A:303 , PRO A:305 , ALA A:306 , GLN A:309 , LEU A:311 , ASP A:312 , ASN A:334 , GLY A:335 , PRO A:336 , GLY A:338 , VAL A:339 , GLU A:341 , ASP A:372 , MG A:416 , 3PG A:418
BINDING SITE FOR RESIDUE ATP A 417
3
AC3
SOFTWARE
LYS A:5 , GLY A:370 , GLY A:392 , GLY A:393 , GLY A:394 , ATP A:417
BINDING SITE FOR RESIDUE 3PG A 418
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PGLYCERATE_KINASE (A:17-27)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PGLYCERATE_KINASE
PS00111
Phosphoglycerate kinase signature.
PGK_YEAST
18-28
1
A:17-27
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:0-415)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YCR012W
1
YCR012W.1
III:137744-138994
1251
PGK_YEAST
1-416
416
1
A:0-415
416
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3pgka_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate kinase
(42)
Superfamily
:
Phosphoglycerate kinase
(42)
Family
:
Phosphoglycerate kinase
(39)
Protein domain
:
Phosphoglycerate kinase
(16)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d3pgka_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3pgkA01 (A:1-186)
2a: CATH_3pgkA02 (A:193-401)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1260, no name defined]
(25)
Baker's yeast (Saccharomyces cerevisiae)
(3)
1a
3pgkA01
A:1-186
Homologous Superfamily
:
[code=3.40.50.1270, no name defined]
(25)
Baker's yeast (Saccharomyces cerevisiae)
(3)
2a
3pgkA02
A:193-401
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PGK_3pgkA01 (A:7-403)
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Clan
:
no clan defined [family: PGK]
(23)
Family
:
PGK
(23)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
PGK-3pgkA01
A:7-403
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Chain A
Asymmetric Unit 1
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