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3PFO
Asym. Unit
Info
Asym.Unit (298 KB)
Biol.Unit 1 (291 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE ACETYLORNITHINE DEACETYLASE (RPA2325) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 1.90 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
28 Oct 10 (Deposition) - 10 Nov 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Metal Binding, Merops M20A Family, Amino-Acid Biosynthesis, Metallopeptidase, Phosphorylase/Hydrolase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Acetylornithine Deacetylase (Rpa2325) From Rhodopseudomonas Palustris Cga009 At 1. 90 A Resolution
To Be Published
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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No.
Name
Count
Type
Full Name
1
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:110 , ASP A:143 , GLU A:177 , GLU A:201 , ZN A:451 , HOH A:510
BINDING SITE FOR RESIDUE ZN A 450
02
AC2
SOFTWARE
ASP A:143 , GLU A:178 , HIS A:401 , ZN A:450 , HOH A:510
BINDING SITE FOR RESIDUE ZN A 451
03
AC3
SOFTWARE
GLY A:350 , GLU A:353 , PRO A:389 , EDO A:502 , HOH A:538 , HOH A:638
BINDING SITE FOR RESIDUE EDO A 500
04
AC4
SOFTWARE
ARG A:190 , ASN A:256 , ALA A:257 , LYS A:269 , ASN A:270 , HOH A:618 , HOH A:648
BINDING SITE FOR RESIDUE EDO A 501
05
AC5
SOFTWARE
PRO A:389 , EDO A:500
BINDING SITE FOR RESIDUE EDO A 502
06
AC6
SOFTWARE
ARG A:261 , PRO A:263 , HOH A:570
BINDING SITE FOR RESIDUE EDO A 503
07
AC7
SOFTWARE
PHE A:30 , GLN A:54 , HOH A:583
BINDING SITE FOR RESIDUE EDO A 504
08
AC8
SOFTWARE
GLY A:282 , ASP A:283 , THR A:288 , ALA A:290 , HOH A:1013 , HOH B:1030
BINDING SITE FOR RESIDUE EDO A 505
09
AC9
SOFTWARE
ASP B:143 , GLU B:178 , HIS B:401 , ZN B:451 , HOH B:511
BINDING SITE FOR RESIDUE ZN B 450
10
BC1
SOFTWARE
HIS B:110 , ASP B:143 , GLU B:177 , GLU B:201 , ZN B:450 , HOH B:511
BINDING SITE FOR RESIDUE ZN B 451
11
BC2
SOFTWARE
GLU B:347 , GLY B:350 , GLU B:353 , PRO B:389
BINDING SITE FOR RESIDUE EDO B 506
12
BC3
SOFTWARE
ARG B:33 , PRO B:263
BINDING SITE FOR RESIDUE EDO B 507
13
BC4
SOFTWARE
ARG B:311 , GLU B:314 , TRP B:336 , HOH B:966
BINDING SITE FOR RESIDUE EDO B 508
14
BC5
SOFTWARE
ASP B:69 , ARG B:190
BINDING SITE FOR RESIDUE EDO B 509
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M20_3pfoB01 (B:106-425)
1b: PFAM_Peptidase_M20_3pfoB02 (B:106-425)
2a: PFAM_M20_dimer_3pfoB03 (B:209-325)
2b: PFAM_M20_dimer_3pfoB04 (B:209-325)
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Clans
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Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M20
(17)
Rhodopseudomonas palustris
(1)
1a
Peptidase_M20-3pfoB01
B:106-425
1b
Peptidase_M20-3pfoB02
B:106-425
Clan
:
no clan defined [family: M20_dimer]
(13)
Family
:
M20_dimer
(13)
Rhodopseudomonas palustris
(1)
2a
M20_dimer-3pfoB03
B:209-325
2b
M20_dimer-3pfoB04
B:209-325
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Asymmetric Unit 1
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