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3PFE
Asym. Unit
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Asym.Unit (181 KB)
Biol.Unit 1 (343 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A M20A METALLO PEPTIDASE (DAPE, LPG0809) FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1 AT 1.50 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
28 Oct 10 (Deposition) - 17 Nov 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Metal Binding, Merops M20 Familiy, Phosphorylase/Hydrolase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A M20A Metallo Peptidase (Dape, Lpg0809) From Legionella Pneumophila Subsp. Pneumophila Str Philadelphia 1 At 1. 50 A Resolution
To Be Published
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Hetero Components
(6, 39)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: IMIDAZOLE (IMDa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
IMD
1
Ligand/Ion
IMIDAZOLE
4
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZN
4
Ligand/Ion
ZINC ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:96 , ASP A:129 , GLU A:162 , ASP A:190 , ZN A:502 , HOH A:926
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:129 , GLU A:163 , HIS A:442 , ZN A:501 , GOL A:518 , HOH A:926
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
HIS A:52 , ASP A:264 , CL A:507 , CL A:508
BINDING SITE FOR RESIDUE ZN A 503
04
AC4
SOFTWARE
GLU A:410 , CL A:505 , IMD A:513 , HOH A:1002
BINDING SITE FOR RESIDUE ZN A 504
05
AC5
SOFTWARE
SER A:226 , ARG A:305 , GLU A:410 , GLY A:411 , ZN A:504 , IMD A:513 , HOH A:941
BINDING SITE FOR RESIDUE CL A 505
06
AC6
SOFTWARE
SER A:224 , ASN A:327 , VAL A:328 , HIS A:442 , HOH A:692
BINDING SITE FOR RESIDUE CL A 506
07
AC7
SOFTWARE
HIS A:52 , ASP A:264 , ZN A:503
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
GLN A:48 , HIS A:52 , ASP A:264 , ZN A:503
BINDING SITE FOR RESIDUE CL A 508
09
AC9
SOFTWARE
PHE A:424 , PRO A:425 , LYS A:426 , HOH A:681
BINDING SITE FOR RESIDUE CL A 509
10
BC1
SOFTWARE
HIS A:223 , ARG A:340 , THR A:413 , HOH A:692
BINDING SITE FOR RESIDUE CL A 510
11
BC2
SOFTWARE
GLY A:105 , TRP A:106 , HOH A:823 , HOH A:890
BINDING SITE FOR RESIDUE CL A 511
12
BC3
SOFTWARE
ASP A:37 , ALA A:38
BINDING SITE FOR RESIDUE CL A 512
13
BC4
SOFTWARE
HIS A:223 , SER A:226 , GLU A:410 , LEU A:435 , ZN A:504 , CL A:505 , GOL A:518 , HOH A:555
BINDING SITE FOR RESIDUE IMD A 513
14
BC5
SOFTWARE
GLN A:269 , GLN A:272 , TYR A:407 , HOH A:601 , HOH A:627
BINDING SITE FOR RESIDUE PEG A 514
15
BC6
SOFTWARE
GLN A:240 , ASN A:249 , PRO A:363 , TYR A:364 , HOH A:712
BINDING SITE FOR RESIDUE GOL A 515
16
BC7
SOFTWARE
THR A:250 , GLY A:251 , GLU A:252 , ASN A:304 , ARG A:308 , HOH A:540 , HOH A:580 , HOH A:666 , HOH A:1034
BINDING SITE FOR RESIDUE GOL A 516
17
BC8
SOFTWARE
LYS A:58 , GLU A:68 , ILE A:69 , HOH A:664 , HOH A:998
BINDING SITE FOR RESIDUE GOL A 517
18
BC9
SOFTWARE
ASP A:190 , HIS A:223 , GLU A:410 , GLY A:412 , ILE A:414 , LEU A:435 , HIS A:442 , ZN A:502 , IMD A:513 , HOH A:768 , HOH A:926
BINDING SITE FOR RESIDUE GOL A 518
19
CC1
SOFTWARE
LYS A:177 , GLU A:178 , GLY A:181 , GLN A:423 , HOH A:545 , HOH A:788
BINDING SITE FOR RESIDUE GOL A 519
20
CC2
SOFTWARE
GLY A:165 , SER A:166 , GLY A:375 , GLY A:376 , SER A:377 , HOH A:613 , HOH A:714 , HOH A:964
BINDING SITE FOR RESIDUE GOL A 520
21
CC3
SOFTWARE
SER A:107 , LEU A:110 , LYS A:118
BINDING SITE FOR RESIDUE GOL A 521
22
CC4
SOFTWARE
HIS A:438 , HIS A:449 , HOH A:706 , HOH A:833 , HOH A:868
BINDING SITE FOR RESIDUE GOL A 522
23
CC5
SOFTWARE
HIS A:35 , SER A:164 , TYR A:167 , HOH A:835
BINDING SITE FOR RESIDUE GOL A 523
24
CC6
SOFTWARE
GLU A:41 , GLU A:42 , TYR A:259 , CYS A:260 , ASP A:261 , HOH A:910 , HOH A:991
BINDING SITE FOR RESIDUE GOL A 524
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M20_3pfeA01 (A:92-466)
2a: PFAM_M20_dimer_3pfeA02 (A:203-366)
View:
Select:
Label:
Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M20
(17)
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
(1)
1a
Peptidase_M20-3pfeA01
A:92-466
Clan
:
no clan defined [family: M20_dimer]
(13)
Family
:
M20_dimer
(13)
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
(1)
2a
M20_dimer-3pfeA02
A:203-366
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Asymmetric Unit 1
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