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3PEW
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
S. CEREVISIAE DBP5 L327V BOUND TO RNA AND ADP BEF3
Authors
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K
Date
:
27 Oct 10 (Deposition) - 23 Mar 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Reca, Dead-Box, Atpase, Helicase, Mrna Export, Nuclear Pore, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K. Weis
A Conserved Mechanism Of Dead-Box Atpase Activation By Nucleoporins And Insp(6) In Mrna Export.
Nature V. 472 238 2011
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: BERYLLIUM TRIFLUORIDE ION (BEFa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: NITRATE ION (NO3a)
4b: NITRATE ION (NO3b)
4c: NITRATE ION (NO3c)
4d: NITRATE ION (NO3d)
4e: NITRATE ION (NO3e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BEF
1
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
NO3
5
Ligand/Ion
NITRATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:112 , LYS A:114 , GLN A:119 , GLY A:141 , THR A:142 , GLY A:143 , LYS A:144 , THR A:145 , ASP A:395 , ARG A:429 , PHE A:430 , MG A:1001 , BEF A:1002 , HOH A:1010 , HOH A:1013 , HOH A:1033 , HOH A:1053 , HOH A:1087 , HOH A:1101 , HOH A:1107 , HOH A:1108 , HOH A:1322
BINDING SITE FOR RESIDUE ADP A 1000
02
AC2
SOFTWARE
ADP A:1000 , BEF A:1002 , HOH A:1010 , HOH A:1017 , HOH A:1096 , HOH A:1107
BINDING SITE FOR RESIDUE MG A 1001
03
AC3
SOFTWARE
SER A:140 , LYS A:144 , GLU A:240 , GLY A:393 , ARG A:426 , ARG A:429 , ADP A:1000 , MG A:1001 , HOH A:1011 , HOH A:1017 , HOH A:1062 , HOH A:1096 , HOH A:1107
BINDING SITE FOR RESIDUE BEF A 1002
04
AC4
SOFTWARE
HOH A:1184 , HOH A:1204 , HOH A:1279 , HOH A:1350 , HOH A:1357 , HOH A:1448
BINDING SITE FOR RESIDUE MG A 1003
05
AC5
SOFTWARE
ASP A:264 , HOH A:1161 , HOH A:1162 , HOH A:1163 , HOH A:1164 , HOH A:1165 , HOH A:1166 , HOH A:1167 , HOH A:1453 , HOH A:1478
BINDING SITE FOR RESIDUE MG A 1004
06
AC6
SOFTWARE
LYS A:105 , PHE A:188 , ILE A:255 , LYS A:258 , ARG A:259 , ILE A:285
BINDING SITE FOR RESIDUE NO3 A 1005
07
AC7
SOFTWARE
LYS A:117 , ILE A:118 , SER A:138 , GLN A:139 , THR A:142 , HOH A:1171 , HOH A:1355 , HOH A:1463
BINDING SITE FOR RESIDUE NO3 A 1006
08
AC8
SOFTWARE
ARG A:132 , ASN A:288 , ARG A:463 , PRO A:465 , HOH A:1058 , HOH A:1177 , HOH A:1428 , HOH A:1455
BINDING SITE FOR RESIDUE NO3 A 1007
09
AC9
SOFTWARE
ASN A:208 , ARG A:224 , ARG A:256 , PHE A:260 , HOH A:1296
BINDING SITE FOR RESIDUE NO3 A 1008
10
BC1
SOFTWARE
GLN A:253 , U B:4 , U B:5
BINDING SITE FOR RESIDUE NO3 B 1009
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:92-120)
2: DEAD_ATP_HELICASE (A:237-245)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
DBP5_YEAST
92-120
1
A:92-120
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
DBP5_YEAST
237-245
1
A:237-245
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_DEAD_3pewA01 (A:116-281)
2a: PFAM_Helicase_C_3pewA02 (A:348-431)
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
DEAD-3pewA01
A:116-281
Family
:
Helicase_C
(51)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(14)
2a
Helicase_C-3pewA02
A:348-431
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