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3PEU
Asym. Unit
Info
Asym.Unit (172 KB)
Biol.Unit 1 (165 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
S. CEREVISIAE DBP5 L327V C-TERMINAL DOMAIN BOUND TO GLE1 H337R AND IP6
Authors
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K
Date
:
27 Oct 10 (Deposition) - 23 Mar 11 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Reca, Heat, Dead-Box, Atpase, Helicase, Mrna Export, Nuclear Pore, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K. Weis
A Conserved Mechanism Of Dead-Box Atpase Activation By Nucleoporins And Insp(6) In Mrna Export.
Nature V. 472 238 2011
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: INOSITOL HEXAKISPHOSPHATE (IHPa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
4a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
IHP
1
Ligand/Ion
INOSITOL HEXAKISPHOSPHATE
3
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:340 , LYS B:510
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
VAL A:389 , ASP A:406 , LEU A:407 , PRO A:408 , THR A:409 , ARG A:423 , HOH A:1008 , ASN B:463
BINDING SITE FOR RESIDUE GOL A 1002
3
AC3
SOFTWARE
LYS A:477 , LYS A:481 , LYS B:264 , LYS B:333 , ARG B:337 , ARG B:374 , LYS B:377 , LYS B:378 , HOH B:1025 , HOH B:1043 , HOH B:1044 , HOH B:1051 , HOH B:1052
BINDING SITE FOR RESIDUE IHP B 1003
4
AC4
SOFTWARE
ILE B:389 , ASN B:411 , ASP B:415 , ASN B:467 , HOH B:1031
BINDING SITE FOR RESIDUE GOL B 1004
5
AC5
SOFTWARE
PHE B:246 , ILE B:249 , GLY B:384 , THR B:386 , ARG B:456 , THR B:460 , PRO B:461 , LEU B:464
BINDING SITE FOR RESIDUE GOL B 1005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3peua_ (A:)
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(
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(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
1a
d3peua_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Helicase_C_3peuA01 (A:348-431)
2a: PFAM_GLE1_3peuB01 (B:256-502)
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Helicase_C
(51)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(14)
1a
Helicase_C-3peuA01
A:348-431
Clan
:
no clan defined [family: GLE1]
(4)
Family
:
GLE1
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
2a
GLE1-3peuB01
B:256-502
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Show PDB file:
Asym.Unit (172 KB)
Header - Asym.Unit
Biol.Unit 1 (165 KB)
Header - Biol.Unit 1
Biol.Unit 2 (166 KB)
Header - Biol.Unit 2
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