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3PEC
Biol. Unit 3
Info
Asym.Unit (185 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (65 KB)
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(1)
Title
:
SIDEROCALIN RECOGNITIN OF CARBOXYMYCOBACTINS: INTERFERENCE BY THE IMMUNE SYSTEM IN INTRACELLULAR IRON ACQUISITION BY MYCOBACTERIA TUBERCULOSIS
Authors
:
M. C. Clifton
Date
:
25 Oct 10 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
8-Stranded Anti-Parallel Beta Barrel, Siderocalin, Siderophore Binding, Antimicrobial Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. M. Hoette, M. C. Clifton, A. M. Zawadzka, M. A. Holmes, R. K. Strong, K. R. Raymond
Siderocalin Recognitin Of Carboxymycobactins: Interference By The Immune System In Intracellular Iron Acquisition By Mycobacteria Tuberculosis
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: FE (III) ION (FEa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
5a: 9-{HYDROXY[(5S,6R)-6-HYDROXY-6-{[(... (ZYGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
ZYG
1
Ligand/Ion
9-{HYDROXY[(5S,6R)-6-HYDROXY-6-{[(1S)-3-{[(3S)-1-HYDROXY-2-OXOAZEPAN-3-YL]AMINO}-1-METHYL-3-OXOPROPYL]OXY}-5-({[(4S)-2-(2-HYDROXYPHENYL)-4,5-DIHYDRO-1,3-OXAZOL-4-YL]CARBONYL}AMINO)HEXYL]AMINO}-9-OXONONANOIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:165 , HOH A:293 , LYS C:75
BINDING SITE FOR RESIDUE GOL A 179
02
AC4
SOFTWARE
ASN A:114 , GLN A:117 , HIS A:118 , HOH A:200 , ASN C:116
BINDING SITE FOR RESIDUE GOL A 182
03
AC6
SOFTWARE
ZYG C:188
BINDING SITE FOR RESIDUE FE C 179
04
AC7
SOFTWARE
GLN A:117 , ASN C:114 , HIS C:118 , HOH C:282
BINDING SITE FOR RESIDUE GOL C 180
05
AC8
SOFTWARE
THR C:93 , LEU C:94 , SER C:105 , TYR C:106 , HOH C:234 , HOH C:278 , HOH C:379
BINDING SITE FOR RESIDUE GOL C 181
06
AC9
SOFTWARE
HOH C:269
BINDING SITE FOR RESIDUE NA C 182
07
BC1
SOFTWARE
HOH A:225 , ASN C:21 , PHE C:22
BINDING SITE FOR RESIDUE NA C 183
08
BC2
SOFTWARE
SER C:112 , HIS C:118
BINDING SITE FOR RESIDUE NA C 184
09
BC3
SOFTWARE
LYS A:75 , PRO C:162 , ASN C:164 , HIS C:165 , HOH C:257 , HOH C:305
BINDING SITE FOR RESIDUE SO4 C 186
10
BC4
SOFTWARE
LYS C:50 , ARG C:72 , LYS C:73
BINDING SITE FOR RESIDUE SO4 C 187
11
BC5
SOFTWARE
ALA C:40 , TYR C:52 , THR C:54 , SER C:68 , LEU C:70 , ARG C:81 , TYR C:106 , PHE C:123 , LYS C:125 , TYR C:132 , PHE C:133 , LYS C:134 , TYR C:138 , FE C:179
BINDING SITE FOR RESIDUE ZYG C 188
12
BC6
SOFTWARE
ASN A:25 , GLN C:28
BINDING SITE FOR RESIDUE GOL C 3731
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (C:21-34)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
NGAL_HUMAN
41-54
1
-
-
C:21-34
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3peca_ (A:)
1b: SCOP_d3pecb_ (B:)
1c: SCOP_d3pecc_ (C:)
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Protein Domains
(
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(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Neutrophil gelatinase-associated lipocalin (NGAL)
(28)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d3peca_
A:
1b
d3pecb_
B:
1c
d3pecc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Asym.Unit (185 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
Biol.Unit 3 (65 KB)
Header - Biol.Unit 3
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