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3PDB
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE MITOCHONDRIAL ASPARTATE AMINOTRANSFERASE IN COMPLEX WITH OXALOACETIC ACID
Authors
:
Q. Han, H. Robinson, T. Cai, D. A. Tagle, J. Li
Date
:
22 Oct 10 (Deposition) - 10 Nov 10 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha & Beta Protein, Aminotransferase, Plp-Binding, Mitochondrion, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Q. Han, H. Robinson, T. Cai, D. A. Tagle, J. Li
Biochemical And Structural Characterization Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identifie Kynurenine Aminotransferase-Iv.
Biosci. Rep. V. 31 323 2011
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
1g: BETA-MERCAPTOETHANOL (BMEg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
3b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
4a: OXALOACETATE ION (OAAa)
5a: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPa)
5b: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
7
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GOL
5
Ligand/Ion
GLYCEROL
3
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4
OAA
1
Ligand/Ion
OXALOACETATE ION
5
PMP
2
Ligand/Ion
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:67 , GLU A:343 , GLY A:346 , MET A:347
BINDING SITE FOR RESIDUE BME A 1
02
AC2
SOFTWARE
ASN A:91 , HOH A:518 , PRO B:74 , VAL B:76
BINDING SITE FOR RESIDUE GOL A 431
03
AC3
SOFTWARE
LEU A:112 , GLY A:254 , ASP A:255 , ARG A:262 , ARG A:337
BINDING SITE FOR RESIDUE GOL A 432
04
AC4
SOFTWARE
ILE A:44 , GLY A:65 , TRP A:162 , ASN A:215 , ARG A:407 , ARG B:313 , HOH B:482 , HOH B:506
BINDING SITE FOR RESIDUE OAA B 1
05
AC5
SOFTWARE
GLY B:65 , LYS B:279 , PHE B:381 , PMP B:432
BINDING SITE FOR RESIDUE BME B 431
06
AC6
SOFTWARE
TYR A:96 , SER B:133 , GLY B:134 , THR B:135 , TRP B:162 , ASN B:215 , ASP B:243 , ALA B:245 , TYR B:246 , SER B:276 , LYS B:279 , ARG B:287 , BME B:431 , HOH B:625 , HOH B:711 , HOH B:715
BINDING SITE FOR RESIDUE PMP B 432
07
AC7
SOFTWARE
TYR B:67 , TYR B:75 , GLU B:343 , GLY B:346
BINDING SITE FOR RESIDUE BME B 433
08
AC8
SOFTWARE
GLY C:65 , TRP C:162 , ASN C:215 , LLP C:279 , PHE C:381
BINDING SITE FOR RESIDUE BME C 1
09
AC9
SOFTWARE
TYR C:67 , TYR C:75 , GLU C:343 , GLY C:346
BINDING SITE FOR RESIDUE BME C 431
10
BC1
SOFTWARE
PRO C:74 , VAL C:76 , ARG C:81 , ASN D:91 , ASP D:93
BINDING SITE FOR RESIDUE GOL C 432
11
BC2
SOFTWARE
GLY D:65 , TRP D:162 , LYS D:279 , ARG D:407 , PMP D:432
BINDING SITE FOR RESIDUE BME D 1
12
BC3
SOFTWARE
TYR D:67 , ASP D:69 , GLY D:346 , HOH D:551 , HOH D:558
BINDING SITE FOR RESIDUE BME D 431
13
BC4
SOFTWARE
TYR C:96 , BME D:1 , SER D:133 , GLY D:134 , THR D:135 , LEU D:138 , TRP D:162 , ASN D:215 , ASP D:243 , TYR D:246 , SER D:276 , ALA D:278 , LYS D:279 , ARG D:287 , HOH D:498 , HOH D:712
BINDING SITE FOR RESIDUE PMP D 432
14
BC5
SOFTWARE
GLU D:111 , LEU D:112 , ASP D:255 , ARG D:262 , ARG D:337 , LEU D:341
BINDING SITE FOR RESIDUE GOL D 433
15
BC6
SOFTWARE
HIS D:369 , GLY D:385
BINDING SITE FOR RESIDUE GOL D 434
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_1 (A:276-289,B:276-289,C:276-289,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_1
PS00105
Aminotransferases class-I pyridoxal-phosphate attachment site.
AATM_MOUSE
276-289
4
A:276-289
B:276-289
C:276-289
D:276-289
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3pdba_ (A:)
1b: SCOP_d3pdbb_ (B:)
1c: SCOP_d3pdbc_ (C:)
1d: SCOP_d3pdbd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
automated matches
(16)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d3pdba_
A:
1b
d3pdbb_
B:
1c
d3pdbc_
C:
1d
d3pdbd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_1_2_3pdbD01 (D:57-425)
1b: PFAM_Aminotran_1_2_3pdbD02 (D:57-425)
1c: PFAM_Aminotran_1_2_3pdbD03 (D:57-425)
1d: PFAM_Aminotran_1_2_3pdbD04 (D:57-425)
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Clans
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_1_2
(77)
Mus musculus (Mouse)
(4)
1a
Aminotran_1_2-3pdbD01
D:57-425
1b
Aminotran_1_2-3pdbD02
D:57-425
1c
Aminotran_1_2-3pdbD03
D:57-425
1d
Aminotran_1_2-3pdbD04
D:57-425
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (273 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (137 KB)
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