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Asym. Unit
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Asym.Unit (313 KB)
Biol.Unit 1 (148 KB)
Biol.Unit 2 (148 KB)
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(1)
Title
:
LOW RESOLUTION X-RAY CRYSTAL STRUCTURE OF YEAST RNR1P WITH DATP BOUND IN THE A-SITE
Authors
:
J. W. Fairman, S. R. Wijerathna, C. G. Dealwis
Date
:
19 Oct 10 (Deposition) - 23 Feb 11 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
6.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ribonucleotide Reductase, Oxidoreductase, Nucleotide Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. W. Fairman, S. R. Wijerathna, M. F. Ahmad, H. Xu, R. Nakano, S. Jha, J. Prendergast, R. M. Welin, S. Flodin, A. Roos, P. Nordlund, Z. Li, T. Walz, C. G. Dealwis
Structural Basis For Allosteric Regulation Of Human Ribonucleotide Reductase By Nucleotide-Induced Oligomerization.
Nat. Struct. Mol. Biol. V. 18 316 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 8)
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1: ATP_CONE (A:1-92,B:1-92,C:1-92,D:1-92)
2: RIBORED_LARGE (A:585-607,B:585-607,C:585-607,D:58...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATP_CONE
PS51161
ATP-cone domain profile.
RIR1_YEAST
1-92
4
A:1-92
B:1-92
C:1-92
D:1-92
2
RIBORED_LARGE
PS00089
Ribonucleotide reductase large subunit signature.
RIR1_YEAST
585-607
4
A:585-607
B:585-607
C:585-607
D:585-607
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Exons
(1, 4)
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Exon 1.1 (A:1-746 (gaps) | B:1-746 (gaps) | ...)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YER070W
1
YER070W.1
V:298948-301614
2667
RIR1_YEAST
1-888
888
4
A:1-746 (gaps)
B:1-746 (gaps)
C:1-746 (gaps)
D:1-746 (gaps)
746
746
746
746
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 12)
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all PFAM domains
1a: PFAM_Ribonuc_red_lgC_3pawD01 (D:215-743)
1b: PFAM_Ribonuc_red_lgC_3pawD02 (D:215-743)
1c: PFAM_Ribonuc_red_lgC_3pawD03 (D:215-743)
1d: PFAM_Ribonuc_red_lgC_3pawD04 (D:215-743)
2a: PFAM_ATP_cone_3pawD05 (D:1-89)
2b: PFAM_ATP_cone_3pawD06 (D:1-89)
2c: PFAM_ATP_cone_3pawD07 (D:1-89)
2d: PFAM_ATP_cone_3pawD08 (D:1-89)
3a: PFAM_Ribonuc_red_lgN_3pawD09 (D:141-213)
3b: PFAM_Ribonuc_red_lgN_3pawD10 (D:141-213)
3c: PFAM_Ribonuc_red_lgN_3pawD11 (D:141-213)
3d: PFAM_Ribonuc_red_lgN_3pawD12 (D:141-213)
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Clan
:
PFL-like
(29)
Family
:
Ribonuc_red_lgC
(23)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(5)
1a
Ribonuc_red_lgC-3pawD01
D:215-743
1b
Ribonuc_red_lgC-3pawD02
D:215-743
1c
Ribonuc_red_lgC-3pawD03
D:215-743
1d
Ribonuc_red_lgC-3pawD04
D:215-743
Clan
:
no clan defined [family: ATP-cone]
(16)
Family
:
ATP-cone
(16)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
2a
ATP-cone-3pawD05
D:1-89
2b
ATP-cone-3pawD06
D:1-89
2c
ATP-cone-3pawD07
D:1-89
2d
ATP-cone-3pawD08
D:1-89
Clan
:
no clan defined [family: Ribonuc_red_lgN]
(22)
Family
:
Ribonuc_red_lgN
(22)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(5)
3a
Ribonuc_red_lgN-3pawD09
D:141-213
3b
Ribonuc_red_lgN-3pawD10
D:141-213
3c
Ribonuc_red_lgN-3pawD11
D:141-213
3d
Ribonuc_red_lgN-3pawD12
D:141-213
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Asym.Unit (313 KB)
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