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3PA1
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (112 KB)
Biol.Unit 3 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 IN COMPLEX WITH HBGA TYPE A
Authors
:
G. S. Hansman, C. Biertumpfel, L. Chen, I. Georgiev, J. S. Mclellan, K. K P. D. Kwong
Date
:
18 Oct 10 (Deposition) - 11 May 11 (Release) - 29 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Norovirus, P-Domain, Capsid, Receptor, Histo Blood Group Antigen (Hbga), Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Hansman, C. Biertumpfel, I. Georgiev, J. S. Mclellan, L. Chen, T. Zhou, K. Katayama, P. D. Kwong
Crystal Structures Of Gii. 10 And Gii. 12 Norovirus Protrudin Domains In Complex With Histo-Blood Group Antigens Reveal Details For A Potential Site Of Vulnerability.
J. Virol. V. 85 6687 2011
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-D-GALACTOSE (GALa)
5a: IMIDAZOLE (IMDa)
5b: IMIDAZOLE (IMDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2G
1
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
IMD
2
Ligand/Ion
IMIDAZOLE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GAL A:2 , A2G A:3 , EDO A:13 , ALA A:354 , ASN A:355 , ARG A:356 , ASP A:385 , PHE A:532 , HOH B:124 , GLY B:450 , GLY B:451 , TYR B:452
BINDING SITE FOR RESIDUE FUC A 1
02
AC2
SOFTWARE
FUC A:1 , A2G A:3 , PHE A:532 , THR A:534 , HOH A:625 , HOH A:635 , HOH A:730 , GLY B:451
BINDING SITE FOR RESIDUE GAL A 2
03
AC3
SOFTWARE
FUC A:1 , GAL A:2 , HIS A:358 , ASP A:385 , PHE A:532 , HOH A:660 , HOH A:672 , HOH A:822 , IMD B:17 , TRP B:381
BINDING SITE FOR RESIDUE A2G A 3
04
AC4
SOFTWARE
PRO A:245 , HOH B:38 , HOH B:53 , LEU B:279 , THR B:281 , ARG B:287
BINDING SITE FOR RESIDUE EDO B 1
05
AC5
SOFTWARE
HOH B:24 , HOH B:135 , ASN B:309 , LEU B:310 , ASN B:311 , LEU B:325 , HOH B:544
BINDING SITE FOR RESIDUE EDO B 2
06
AC6
SOFTWARE
HOH A:113 , HOH B:3 , ARG B:287 , ARG B:341 , HOH B:631
BINDING SITE FOR RESIDUE EDO B 4
07
AC7
SOFTWARE
ARG A:299 , GLY A:300 , SER A:379 , THR A:380 , TRP A:381 , HOH A:606
BINDING SITE FOR RESIDUE EDO A 5
08
AC8
SOFTWARE
LEU A:272 , GLN A:273 , GLY A:274 , THR A:276 , LEU A:325 , HOH A:791 , HOH A:812
BINDING SITE FOR RESIDUE EDO A 6
09
AC9
SOFTWARE
HOH A:35 , HOH A:36 , HOH A:153 , ASN A:309 , LEU A:310 , ASN A:311 , LEU A:325
BINDING SITE FOR RESIDUE EDO A 7
10
BC1
SOFTWARE
HOH A:42 , HOH A:59 , LEU A:279 , THR A:281 , ARG A:287 , PRO B:245
BINDING SITE FOR RESIDUE EDO A 8
11
BC2
SOFTWARE
HOH B:112 , ARG B:443 , ASN B:454 , HOH B:697 , HOH B:755
BINDING SITE FOR RESIDUE EDO B 9
12
BC3
SOFTWARE
HOH A:150 , GLY A:451 , TYR A:452 , HOH A:638 , HOH B:184 , ALA B:354 , ASN B:355
BINDING SITE FOR RESIDUE EDO A 10
13
BC4
SOFTWARE
LEU B:272 , GLN B:273 , GLY B:274 , THR B:276 , LEU B:325 , HOH B:754 , HOH B:807
BINDING SITE FOR RESIDUE EDO B 11
14
BC5
SOFTWARE
GLU A:236 , HOH B:95 , GLN B:277 , LEU B:278
BINDING SITE FOR RESIDUE EDO B 12
15
BC6
SOFTWARE
FUC A:1 , HOH A:81 , ALA A:354 , ARG A:356 , HOH A:801
BINDING SITE FOR RESIDUE EDO A 13
16
BC7
SOFTWARE
HOH A:156 , GLN A:471 , PRO B:230 , GLU B:464 , GLN B:467 , HIS B:468 , HOH B:552 , HOH B:621
BINDING SITE FOR RESIDUE EDO B 14
17
BC8
SOFTWARE
HOH A:182 , HOH A:191 , ARG A:287 , ARG A:341 , HOH A:541 , PHE B:445 , PRO B:447
BINDING SITE FOR RESIDUE EDO A 15
18
BC9
SOFTWARE
HOH A:21 , HOH A:31 , HOH A:109 , HOH A:159 , PRO A:243 , PRO A:280 , THR A:281 , PRO B:243 , PRO B:280 , THR B:281
BINDING SITE FOR RESIDUE EDO A 16
19
CC1
SOFTWARE
A2G A:3 , HIS A:358 , GLU B:359 , LYS B:449
BINDING SITE FOR RESIDUE IMD B 17
20
CC2
SOFTWARE
GLU A:359 , TRP A:381 , LYS A:449 , HIS B:358
BINDING SITE FOR RESIDUE IMD A 18
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Calici_coat_3pa1B01 (B:224-291)
1b: PFAM_Calici_coat_3pa1B02 (B:224-291)
2a: PFAM_Calici_coat_C_3pa1B03 (B:307-538)
2b: PFAM_Calici_coat_C_3pa1B04 (B:307-538)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Calici_coat
(20)
Norwalk virus
(9)
1a
Calici_coat-3pa1B01
B:224-291
1b
Calici_coat-3pa1B02
B:224-291
Clan
:
no clan defined [family: Calici_coat_C]
(19)
Family
:
Calici_coat_C
(19)
Norwalk virus
(9)
2a
Calici_coat_C-3pa1B03
B:307-538
2b
Calici_coat_C-3pa1B04
B:307-538
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (227 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (112 KB)
Header - Biol.Unit 2
Biol.Unit 3 (112 KB)
Header - Biol.Unit 3
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