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3P9P
Asym. Unit
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Asym.Unit (1.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
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(1)
Title
:
STRUCTURE OF I274V VARIANT OF E. COLI KATE
Authors
:
P. C. Loewen, V. Jha, S. Louis, P. Chelikani, X. Carpena, I. Fita
Date
:
18 Oct 10 (Deposition) - 22 Dec 10 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Catalase, I274A Variant, Heme Orientation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Jha, S. Louis, P. Chelikani, X. Carpena, L. J. Donald, I. Fita, P. C. Loewen
Modulation Of Heme Orientation And Binding By A Single Residue In Catalase Hpii Of Escherichia Coli.
Biochemistry V. 50 2101 2011
[
close entry info
]
Hetero Components
(3, 16)
Info
All Hetero Components
1a: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDa)
1b: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDb)
1c: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDc)
1d: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDd)
2a: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDEa)
2b: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDEb)
2c: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDEc)
2d: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDEd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HDD
4
Ligand/Ion
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
2
HDE
4
Ligand/Ion
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE 17R, 18S
3
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:214 , VAL A:274 , HIS A:275 , PHE A:391 , LEU A:407 , GLY A:410 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , ARG A:422 , HOH A:795 , HOH A:850 , HOH A:880 , HOH A:2309 , ASP D:118
BINDING SITE FOR RESIDUE HEM A 754
02
AC2
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , ALA A:211 , PHE A:214 , GLY A:273 , VAL A:274 , PHE A:391 , LEU A:407 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , HOH A:795 , HOH A:850 , HOH A:2309
BINDING SITE FOR RESIDUE HDE A 761
03
AC3
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , ALA A:211 , PHE A:214 , GLY A:273 , VAL A:274 , HIS A:275 , PHE A:391 , LEU A:407 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , ARG A:422 , HOH A:795 , HOH A:850 , HOH A:880 , HOH A:2309
BINDING SITE FOR RESIDUE HEM A 755
04
AC4
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , PHE A:214 , VAL A:274 , HIS A:275 , PHE A:391 , LEU A:407 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , HOH A:795 , HOH A:850 , HOH A:880 , HOH A:2309
BINDING SITE FOR RESIDUE HDD A 760
05
AC5
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:206 , PHE B:214 , VAL B:274 , HIS B:275 , LEU B:407 , GLY B:410 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , HOH B:845 , HOH B:898 , HOH B:927 , HOH B:3444 , ASP C:118
BINDING SITE FOR RESIDUE HEM B 754
06
AC6
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , ALA B:211 , PHE B:214 , GLY B:273 , VAL B:274 , PHE B:391 , LEU B:407 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , HOH B:840 , HOH B:845 , HOH B:898 , HOH B:3444
BINDING SITE FOR RESIDUE HDE B 761
07
AC7
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , ALA B:211 , PHE B:214 , VAL B:274 , PHE B:391 , LEU B:407 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , HOH B:845 , HOH B:898 , HOH B:927 , HOH B:3444 , ASP C:118
BINDING SITE FOR RESIDUE HEM B 755
08
AC8
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:206 , PHE B:214 , HIS B:275 , PHE B:391 , LEU B:407 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , HOH B:845 , HOH B:898 , HOH B:3444
BINDING SITE FOR RESIDUE HDD B 760
09
AC9
SOFTWARE
ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:206 , PHE C:214 , VAL C:274 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , HOH C:871 , HOH C:929 , HOH C:964 , HOH C:3362
BINDING SITE FOR RESIDUE HEM C 754
10
BC1
SOFTWARE
ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , VAL C:199 , GLY C:200 , ASN C:201 , ALA C:211 , PHE C:214 , GLY C:273 , VAL C:274 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , HOH C:871 , HOH C:929 , HOH C:964 , HOH C:1263 , HOH C:3362
BINDING SITE FOR RESIDUE HDE C 761
11
BC2
SOFTWARE
ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , ALA C:211 , PHE C:214 , VAL C:274 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , HOH C:871 , HOH C:929 , HOH C:964 , HOH C:3362
BINDING SITE FOR RESIDUE HEM C 755
12
BC3
SOFTWARE
ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:206 , PHE C:214 , VAL C:274 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , HOH C:871 , HOH C:929 , HOH C:964 , HOH C:3362
BINDING SITE FOR RESIDUE HDD C 760
13
BC4
SOFTWARE
ASP A:118 , ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:206 , PHE D:214 , HIS D:275 , PHE D:391 , LEU D:407 , GLY D:410 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , ARG D:422 , HOH D:1295 , HOH D:1353 , HOH D:1388
BINDING SITE FOR RESIDUE HEM D 754
14
BC5
SOFTWARE
ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:206 , ALA D:211 , PHE D:214 , GLY D:273 , VAL D:274 , PHE D:391 , LEU D:407 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , HOH D:1295 , HOH D:1353
BINDING SITE FOR RESIDUE HDE D 761
15
BC6
SOFTWARE
ASP A:118 , ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , ALA D:211 , PHE D:214 , VAL D:274 , PHE D:391 , LEU D:407 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , ARG D:422 , HOH D:1295 , HOH D:1353 , HOH D:1388
BINDING SITE FOR RESIDUE HEM D 755
16
BC7
SOFTWARE
ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:206 , PHE D:214 , VAL D:274 , HIS D:275 , PHE D:391 , LEU D:407 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , HOH D:1295 , HOH D:1353 , HOH D:1388
BINDING SITE FOR RESIDUE HDD D 760
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:77-568,B:77-568,C:77-568,D:77-56...)
2: CATALASE_2 (A:117-133,B:117-133,C:117-133,D:11...)
3: CATALASE_1 (A:411-419,B:411-419,C:411-419,D:41...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATE_ECOLI
77-568
4
A:77-568
B:77-568
C:77-568
D:77-568
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATE_ECOLI
117-133
4
A:117-133
B:117-133
C:117-133
D:117-133
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATE_ECOLI
411-419
4
A:411-419
B:411-419
C:411-419
D:411-419
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3p9pa2 (A:598-753)
1b: SCOP_d3p9pc2 (C:598-753)
1c: SCOP_d3p9pd2 (D:598-753)
1d: SCOP_d3p9pb2 (B:598-753)
2a: SCOP_d3p9pa1 (A:28-597)
2b: SCOP_d3p9pc1 (C:28-597)
2c: SCOP_d3p9pd1 (D:28-597)
2d: SCOP_d3p9pb1 (B:28-597)
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(
)
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(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Escherichia coli K-12 [TaxId: 83333]
(19)
1a
d3p9pa2
A:598-753
1b
d3p9pc2
C:598-753
1c
d3p9pd2
D:598-753
1d
d3p9pb2
B:598-753
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Escherichia coli K-12 [TaxId: 83333]
(19)
2a
d3p9pa1
A:28-597
2b
d3p9pc1
C:28-597
2c
d3p9pd1
D:28-597
2d
d3p9pb1
B:28-597
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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