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Getting 'Exon' information from database.
3P9L
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H2-KB IN COMPLEX WITH THE CHICKEN OVALBUMIN EPITOPE OVA
Authors
:
R. Wesselingh, S. Gras, C. Guillonneau, S. J. Turner, J. Rossjohn
Date
:
18 Oct 10 (Deposition) - 19 Oct 11 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,F (1x)
Biol. Unit 2: C,D,E (1x)
Keywords
:
H2Kb, Ova, Apl, Altered Peptide Ligands, Ovalbumin, Tcr, T Cell, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Denton, R. Wesselingh, S. Gras, C. Guillonneau, M. R. Olson, J. D. Mintern, W. Zeng, D. C. Jackson, J. Rossjohn, P. D. Hodgkin, P. C. Doherty, S. J. Turner
Affinity Thresholds For Naive Cd8+ Ctl Activation By Peptides And Engineered Influenza A Viruses
J. Immunol. V. 187 5733 2011
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:57
BINDING SITE FOR RESIDUE CA B 100
2
AC2
SOFTWARE
SER E:57
BINDING SITE FOR RESIDUE CA E 100
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B/E, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B/E, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B/E, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B/E, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B/E
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B/E
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B/E
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B/E
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B/E
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,E:78-84,A:257-263,D:257-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
2
B:78-84
E:78-84
HA1B_MOUSE
278-284
2
A:257-263
D:257-263
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Exons
(1, 2)
Info
All Exons
Exon 1.8b (C:1-8 | F:1-8)
View:
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All Exon Boundaries
1: Boundary 1.7/1.8b
2: Boundary 1.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000037195
1
ENSGALE00000242697
chr2:
68913487-68913441
47
OVAL_CHICK
-
0
0
-
-
1.2a
ENSGALT00000037195
2a
ENSGALE00000242696
chr2:
68911851-68911667
185
OVAL_CHICK
1-56
56
0
-
-
1.3
ENSGALT00000037195
3
ENSGALE00000138911
chr2:
68911415-68911365
51
OVAL_CHICK
57-73
17
0
-
-
1.4
ENSGALT00000037195
4
ENSGALE00000138907
chr2:
68910783-68910655
129
OVAL_CHICK
74-116
43
0
-
-
1.5
ENSGALT00000037195
5
ENSGALE00000138912
chr2:
68910253-68910136
118
OVAL_CHICK
117-156
40
0
-
-
1.6
ENSGALT00000037195
6
ENSGALE00000138908
chr2:
68909176-68909034
143
OVAL_CHICK
156-203
48
0
-
-
1.7
ENSGALT00000037195
7
ENSGALE00000138909
chr2:
68908697-68908542
156
OVAL_CHICK
204-255
52
0
-
-
1.8b
ENSGALT00000037195
8b
ENSGALE00000242681
chr2:
68906957-68905915
1043
OVAL_CHICK
256-386
131
2
C:1-8
F:1-8
8
8
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3p9lb_ (B:)
1b: SCOP_d3p9le_ (E:)
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Select:
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Classes
(
)
(
)
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(
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d3p9lb_
B:
1b
d3p9le_
E:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain F
Asymmetric Unit 1
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Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
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