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3P9F
Biol. Unit 1
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Asym.Unit (61 KB)
Biol.Unit 1 (220 KB)
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Title
:
URATE OXIDASE-AZAXANTHINE-AZIDE TERNARY COMPLEX
Authors
:
L. Gabison, N. Colloc'H, M. El Hajji, B. Castro, M. Chiadmi, T. Prange
Date
:
17 Oct 10 (Deposition) - 28 Sep 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Inhibition, Degradation Mechanism, Peroxisome, Purine Metabolism, Heterotetramer, Oxygen Binding Oxidoreductase, Oxygen Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Gabison, N. Colloc H, M. El Hajji, B. Castro, M. Chiadmi, T. Prange
Azide And Cyanide Have Different Inhibition Modes Of Urate Oxidase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: 8-AZAXANTHINE (AZAa)
3a: AZIDE ION (AZIa)
3b: AZIDE ION (AZIb)
4a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
AZA
4
Ligand/Ion
8-AZAXANTHINE
3
AZI
8
Ligand/Ion
AZIDE ION
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:54 , ALA A:56 , THR A:57 , PHE A:159 , ARG A:176 , SER A:226 , VAL A:227 , GLN A:228 , ASN A:254 , AZI A:303 , HOH A:1002
BINDING SITE FOR RESIDUE AZA A 302
2
AC2
SOFTWARE
LYS A:10 , THR A:57 , ASN A:254 , HIS A:256 , GLY A:286 , ILE A:288 , AZA A:302
BINDING SITE FOR RESIDUE AZI A 303
3
AC3
SOFTWARE
ALA A:6 , ARG A:7 , LYS A:289 , HOH A:1319
BINDING SITE FOR RESIDUE AZI A 304
4
AC4
SOFTWARE
ILE A:88 , TYR A:91 , ASN A:92 , ILE A:94 , GLU A:136 , HOH A:1160
BINDING SITE FOR RESIDUE NA A 850
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
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1: URICASE (A:149-176)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
URICASE
PS00366
Uricase signature.
URIC_ASPFL
150-177
4
A:149-176
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3p9fa1 (A:1-136)
1b: SCOP_d3p9fa2 (A:137-295)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
Urate oxidase (uricase)
(60)
Protein domain
:
Urate oxidase (uricase)
(56)
Aspergillus flavus [TaxId: 5059]
(53)
1a
d3p9fa1
A:1-136
1b
d3p9fa2
A:137-295
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CATH Domains
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