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3P8E
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DIMETHYLARGININE DIMETHYLAMINOHYDROLASE-1 (DDAH-1) COVALENTLY BOUND WITH N5-(1-IMINOPENTYL)-L-ORNITHINE
Authors
:
M. Lluis, Y. Wang, A. F. Monzingo, W. Fast, J. D. Robertus
Date
:
13 Oct 10 (Deposition) - 10 Nov 10 (Release) - 12 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ddah, Nitric Oxide Synthase Regulation, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Lluis, Y. Wang, A. F. Monzingo, W. Fast, J. D. Robertus
Characterization Of C-Alkyl Amidines As Bioavailable Covalent Reversible Inhibitors Of Human Ddah-1.
Chemmedchem V. 6 81 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N~5~-[(1S)-1-AMINOPENTYL]-L-ORNITH... (LN7a)
1b: N~5~-[(1S)-1-AMINOPENTYL]-L-ORNITH... (LN7b)
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Label:
No.
Name
Count
Type
Full Name
1
LN7
2
Ligand/Ion
N~5~-[(1S)-1-AMINOPENTYL]-L-ORNITHINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:30 , ASP A:73 , PHE A:76 , GLU A:78 , ASP A:79 , ARG A:98 , GLY A:129 , ARG A:145 , HIS A:173 , VAL A:268 , ASP A:269 , CYS A:274
BINDING SITE FOR RESIDUE LN7 A 286
2
AC2
SOFTWARE
LEU B:30 , ASP B:73 , PHE B:76 , GLU B:78 , ASP B:79 , ARG B:98 , GLY B:129 , HIS B:173 , VAL B:268 , ASP B:269 , GLY B:270 , CYS B:274 , HOH B:289
BINDING SITE FOR RESIDUE LN7 B 286
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 12)
Info
All Exons
Exon 1.10 (A:9-101 (gaps) | B:9-101 (gaps))
Exon 1.11a (A:102-135 | B:102-135)
Exon 1.12 (A:135-159 | B:135-159)
Exon 1.13 (A:160-199 | B:160-199)
Exon 1.14b (A:200-247 | B:200-247)
Exon 1.15b (A:248-282 | B:248-282)
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All Exon Boundaries
1: Boundary -/1.10
2: Boundary 1.10/1.11a
3: Boundary 1.11a/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14b
6: Boundary 1.14b/1.15b
7: Boundary 1.15b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.10
ENST00000284031
10
ENSE00001013010
chr1:
85930823-85930426
398
DDAH1_HUMAN
1-101
101
2
A:9-101 (gaps)
B:9-101 (gaps)
93
93
1.11a
ENST00000284031
11a
ENSE00001663143
chr1:
85824530-85824431
100
DDAH1_HUMAN
102-135
34
2
A:102-135
B:102-135
34
34
1.12
ENST00000284031
12
ENSE00002130817
chr1:
85817262-85817189
74
DDAH1_HUMAN
135-159
25
2
A:135-159
B:135-159
25
25
1.13
ENST00000284031
13
ENSE00002113532
chr1:
85816217-85816098
120
DDAH1_HUMAN
160-199
40
2
A:160-199
B:160-199
40
40
1.14b
ENST00000284031
14b
ENSE00002116891
chr1:
85790566-85790423
144
DDAH1_HUMAN
200-247
48
2
A:200-247
B:200-247
48
48
1.15b
ENST00000284031
15b
ENSE00001928014
chr1:
85787251-85784168
3084
DDAH1_HUMAN
248-285
38
2
A:248-282
B:248-282
35
35
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3p8ea_ (A:)
1b: SCOP_d3p8eb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Pentein, beta/alpha-propeller
(68)
Superfamily
:
Pentein
(68)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3p8ea_
A:
1b
d3p8eb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Amidinotransf_3p8eB01 (B:12-281)
1b: PFAM_Amidinotransf_3p8eB02 (B:12-281)
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Clan
:
GME
(20)
Family
:
Amidinotransf
(10)
Homo sapiens (Human)
(6)
1a
Amidinotransf-3p8eB01
B:12-281
1b
Amidinotransf-3p8eB02
B:12-281
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Asymmetric Unit 1
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Asym.Unit (92 KB)
Header - Asym.Unit
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