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3P7B
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
P38 INHIBITOR-BOUND
Authors
:
K. K. Moffett, H. Namboodiri
Date
:
12 Oct 10 (Deposition) - 12 Oct 11 (Release) - 25 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Moffett, Z. Konteatis, D. Nguyen, R. Shetty, J. Ludington, T. Fujimoto, K. J. Lee, X. Chai, H. Namboodiri, M. Karpusas, B. Dorsey, F. Guarnieri, M. Bukhtiyarova, E. Springman, E. Michelotti
Discovery Of A Novel Class Of Non-Atp Site Dfg-Out State P3 Inhibitors Utilizing Computationally Assisted Virtual Fragment-Based Drug Design (Vfbdd).
Bioorg. Med. Chem. Lett. V. 21 7155 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
2a: 1-{5-TERT-BUTYL-3-[(5-OXO-1,4-DIAZ... (P7Ba)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
2
P7B
1
Ligand/Ion
1-{5-TERT-BUTYL-3-[(5-OXO-1,4-DIAZEPAN-1-YL)CARBONYL]THIOPHEN-2-YL}-3-NAPHTHALEN-1-YLUREA
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:51 , ARG A:67 , ARG A:70 , GLU A:71 , ILE A:84 , LEU A:104 , THR A:106 , LEU A:167 , ASP A:168 , PHE A:169
BINDING SITE FOR RESIDUE P7B A 362
2
AC2
SOFTWARE
TRP A:197 , HIS A:199 , TYR A:200 , LYS A:249 , ILE A:259 , LEU A:291 , ASP A:292 , SER A:293 , ASP A:294 , HOH A:398
BINDING SITE FOR RESIDUE BOG A 2095
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:30-54)
2: MAPK (A:59-162)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MK14_MOUSE
30-54
1
A:30-54
2
MAPK
PS01351
MAP kinase signature.
MK14_MOUSE
59-162
1
A:59-162
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Exons
(12, 12)
Info
All Exons
Exon 1.1a (A:5-39 (gaps))
Exon 1.4 (A:39-82)
Exon 1.5 (A:83-102)
Exon 1.6 (A:102-139)
Exon 1.7 (A:140-149)
Exon 1.8 (A:150-165)
Exon 1.9 (A:166-204 (gaps))
Exon 1.10 (A:204-228)
Exon 1.11 (A:228-254)
Exon 1.13b (A:255-281)
Exon 1.14 (A:281-339)
Exon 1.15b (A:339-352)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.13b
11: Boundary 1.13b/1.14
12: Boundary 1.14/1.15b
13: Boundary 1.15b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000062694
1a
ENSMUSE00000880763
chr17:
28828287-28828800
514
MK14_MOUSE
1-39
39
1
A:5-39 (gaps)
35
1.4
ENSMUST00000062694
4
ENSMUSE00000392654
chr17:
28850719-28850848
130
MK14_MOUSE
39-82
44
1
A:39-82
44
1.5
ENSMUST00000062694
5
ENSMUSE00000411519
chr17:
28852328-28852386
59
MK14_MOUSE
83-102
20
1
A:83-102
20
1.6
ENSMUST00000062694
6
ENSMUSE00000448250
chr17:
28861689-28861800
112
MK14_MOUSE
102-139
38
1
A:102-139
38
1.7
ENSMUST00000062694
7
ENSMUSE00000448243
chr17:
28862438-28862467
30
MK14_MOUSE
140-149
10
1
A:140-149
10
1.8
ENSMUST00000062694
8
ENSMUSE00000448235
chr17:
28862742-28862789
48
MK14_MOUSE
150-165
16
1
A:150-165
16
1.9
ENSMUST00000062694
9
ENSMUSE00000877186
chr17:
28865302-28865416
115
MK14_MOUSE
166-204
39
1
A:166-204 (gaps)
39
1.10
ENSMUST00000062694
10
ENSMUSE00000448219
chr17:
28865849-28865920
72
MK14_MOUSE
204-228
25
1
A:204-228
25
1.11
ENSMUST00000062694
11
ENSMUSE00000478801
chr17:
28873956-28874035
80
MK14_MOUSE
228-254
27
1
A:228-254
27
1.13b
ENSMUST00000062694
13b
ENSMUSE00000448207
chr17:
28878733-28878811
79
MK14_MOUSE
255-281
27
1
A:255-281
27
1.14
ENSMUST00000062694
14
ENSMUSE00000448199
chr17:
28881928-28882101
174
MK14_MOUSE
281-339
59
1
A:281-339
59
1.15b
ENSMUST00000062694
15b
ENSMUSE00000472953
chr17:
28883216-28885349
2134
MK14_MOUSE
339-360
22
1
A:339-352
14
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3p7ba_ (A:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
MAP kinase p38
(184)
Mouse (Mus musculus) [TaxId: 10090]
(22)
1a
d3p7ba_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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