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3P72
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
STRUCTURE OF PLATELET GLYCOPROTEIN 1B ALPHA WITH A BOUND PEPTIDE INHIBITOR
Authors
:
P. A. Mcewan, R. K. Andrews, J. Emsley
Date
:
12 Oct 10 (Deposition) - 24 Nov 10 (Release) - 24 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Leucine-Rich Repeat, Coagulation, Inhibitor, Blood Clotting-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Mcewan, R. K. Andrews, J. Emsley
Glycoprotein Ibalpha Inhibitor Complex Structure Reveals A Combined Steric And Allosteric Mechanism Of Von Willebrand Factor Antagonism.
Blood V. 114 4883 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:211 , HOH A:277
BINDING SITE FOR RESIDUE CL A 270
2
AC2
SOFTWARE
THR A:81 , GLU A:128 , TYR A:130 , LYS A:132 , SER A:154 , TRP A:230 , VAL A:234 , ASP A:235 , VAL A:236 , LYS A:237 , LYS A:258 , HOH A:274 , HOH B:12 , HOH B:22 , HOH B:60 , HOH B:68 , HOH B:102
BINDING SITE FOR CHAIN B OF OS1 PEPTIDE
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SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_011909 (R56H, chain A, )
02: VAR_014206 (L57F, chain A, )
03: VAR_005256 (C65R, chain A, )
04: VAR_013511 (L70F, chain A, )
05: VAR_014207 (L129P, chain A, )
06: VAR_005257 (T145M, chain A, )
07: VAR_005258 (A156V, chain A, )
08: VAR_005260 (C209S, chain A, )
09: VAR_019657 (G233S, chain A, )
10: VAR_005261 (G233V, chain A, )
11: VAR_011910 (A238S, chain A, )
12: VAR_005262 (M239V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_011909
R
72
H
GP1BA_HUMAN
Polymorphism
6068
A
R
56
H
02
UniProt
VAR_014206
L
73
F
GP1BA_HUMAN
Disease (BSS)
---
A
L
57
F
03
UniProt
VAR_005256
C
81
R
GP1BA_HUMAN
Disease (BSS)
---
A
C
65
R
04
UniProt
VAR_013511
L
86
F
GP1BA_HUMAN
Polymorphism
13306411
A
L
70
F
05
UniProt
VAR_014207
L
145
P
GP1BA_HUMAN
Disease (BSS)
---
A
L
129
P
06
UniProt
VAR_005257
T
161
M
GP1BA_HUMAN
Polymorphism
6065
A
T
145
M
07
UniProt
VAR_005258
A
172
V
GP1BA_HUMAN
Disease (BSS)
---
A
A
156
V
08
UniProt
VAR_005260
C
225
S
GP1BA_HUMAN
Disease (BSS)
---
A
C
209
S
09
UniProt
VAR_019657
G
249
S
GP1BA_HUMAN
Disease (VWDP)
---
A
G
233
S
10
UniProt
VAR_005261
G
249
V
GP1BA_HUMAN
Disease (VWDP)
---
A
G
233
V
11
UniProt
VAR_011910
A
254
S
GP1BA_HUMAN
Polymorphism
382524
A
A
238
S
12
UniProt
VAR_005262
M
255
V
GP1BA_HUMAN
Disease (VWDP)
---
A
M
239
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LRR (A:56-77|A:78-99|A:101-121|A:125-14...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
GP1BA_HUMAN
72-93
94-115
117-137
141-162
165-186
189-210
6
A:56-77
A:78-99
A:101-121
A:125-146
A:149-170
A:173-194
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Exons
(1, 1)
Info
All Exons
Exon 1.2b (A:1-269)
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.3a
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000329125
2b
ENSE00001299958
chr17:
4835900-4837150
1251
GP1BA_HUMAN
1-417
417
1
A:1-269
269
1.3a
ENST00000329125
3a
ENSE00001488421
chr17:
4837187-4837858
672
GP1BA_HUMAN
418-640
223
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3p72a_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Ngr ectodomain-like
(21)
Protein domain
:
von Willebrand factor binding domain of glycoprotein Ib alpha
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3p72a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(4, 5)
Info
all PFAM domains
1a: PFAM_LRR_1_3p72A01 (A:78-97)
2a: PFAM_LRR_7_3p72A02 (A:55-77)
3a: PFAM_LRR_8_3p72A03 (A:148-197)
3b: PFAM_LRR_8_3p72A04 (A:148-197)
4a: PFAM_LRRNT_3p72A05 (A:3-30)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_1
(20)
Homo sapiens (Human)
(13)
1a
LRR_1-3p72A01
A:78-97
Family
:
LRR_7
(15)
Homo sapiens (Human)
(11)
2a
LRR_7-3p72A02
A:55-77
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
3a
LRR_8-3p72A03
A:148-197
3b
LRR_8-3p72A04
A:148-197
Clan
:
no clan defined [family: LRRNT]
(22)
Family
:
LRRNT
(22)
Homo sapiens (Human)
(15)
4a
LRRNT-3p72A05
A:3-30
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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