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3P5C
Asym. Unit
Info
Asym.Unit (155 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
THE STRUCTURE OF THE LDLR/PCSK9 COMPLEX REVEALS THE RECEPTOR IN AN EXTENDED CONFORMATION
Authors
:
P. Lo Surdo, M. J. Bottomley, A. Calzetta, E. C. Settembre, A. Cirillo, Y. Ni, B. Hubbard, A. Sitlani, A. Carfi
Date
:
08 Oct 10 (Deposition) - 26 Oct 11 (Release) - 27 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.20
Chains
:
Asym. Unit : A,L,P
Biol. Unit 1: A,L,P (1x)
Keywords
:
B-Propellor, Receptor, Convertase, Hydrolase-Lipid Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Lo Surdo, M. J. Bottomley, A. Calzetta, E. C. Settembre, A. Cirillo S. Pandit, Y. G. Ni, B. Hubbard, A. Sitlani, A. Carfi
Mechanistic Implications For Ldl Receptor Degradation From The Pcsk9/Ldlr Structure At Neutral Ph.
Embo Rep. V. 12 1300 2011
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS L:292 , THR L:294 , GLU L:296 , ASP L:310
BINDING SITE FOR RESIDUE CA L 1
2
AC2
SOFTWARE
LYS L:273 , ASN L:276 , ASP L:280 , ASP L:286 , GLU L:287
BINDING SITE FOR RESIDUE CA L 2
3
AC3
SOFTWARE
ASP L:333 , ILE L:334 , LEU L:350 , GLY L:353
BINDING SITE FOR RESIDUE CA L 3
4
AC4
SOFTWARE
ALA A:328 , ALA A:330 , VAL A:333 , THR A:335 , CYS A:358 , ASP A:360
BINDING SITE FOR RESIDUE CA A 4
[
close Site info
]
SAPs(SNPs)/Variants
(138, 138)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_058520 (T77I, chain P, )
002: VAR_058521 (R93C, chain P, )
003: VAR_058522 (G106R, chain P, )
004: VAR_058523 (V114A, chain P, )
005: VAR_017199 (S127R, chain P, )
006: VAR_058524 (D129G, chain P, )
007: VAR_058525 (N157K, chain A, )
008: VAR_058526 (R215H, chain A, )
009: VAR_025452 (R237W, chain A, )
010: VAR_058529 (A239D, chain A, )
011: VAR_025453 (L253F, chain A, )
012: VAR_062375 (C255R, chain L, )
013: VAR_072837 (C255W, chain L, )
014: VAR_005349 (C255Y, chain L, )
015: VAR_005350 (E256K, chain L, )
016: VAR_072838 (H264Y, chain L, )
017: VAR_005351 (S265R, chain L, )
018: VAR_007983 (E267K, chain L, )
019: VAR_072839 (R279G, chain L, )
020: VAR_005352 (D280A, chain L, )
021: VAR_072840 (D280G, chain L, )
022: VAR_005354 (C281W, chain L, )
023: VAR_005353 (C281Y, chain L, )
024: VAR_005356 (D283E, chain L, )
025: VAR_005355 (D283N, chain L, )
026: VAR_005357 (S285L, chain L, )
027: VAR_005358 (C292Y, chain L, )
028: VAR_072841 (G293R, chain L, )
029: VAR_005360 (C297F, chain L, )
030: VAR_062376 (C297R, chain L, )
031: VAR_005359 (C297Y, chain L, )
032: VAR_072842 (S305C, chain L, )
033: VAR_005361 (H306Y, chain L, )
034: VAR_067196 (C308F, chain L, )
035: VAR_005362 (C308Y, chain L, )
036: VAR_005363 (G314S, chain L, )
037: VAR_005364 (C317S, chain L, )
038: VAR_005365 (D321E, chain L, )
039: VAR_005366 (D321N, chain L, )
040: VAR_005367 (G322S, chain L, )
041: VAR_005368 (R329P, chain L, )
042: VAR_072843 (C331R, chain L, )
043: VAR_005369 (C331Y, chain L, )
044: VAR_005370 (D333G, chain L, )
045: VAR_005371 (D333V, chain L, )
046: VAR_007984 (D335Y, chain L, )
047: VAR_005372 (E336K, chain L, )
048: VAR_062377 (C337Y, chain L, )
049: VAR_005373 (C343R, chain L, )
050: VAR_007985 (Q345R, chain L, )
051: VAR_005374 (C347R, chain L, )
052: VAR_072844 (C347Y, chain L, )
053: VAR_062378 (N349T, chain L, )
054: VAR_072845 (G352D, chain L, )
055: VAR_058530 (R357H, chain A, )
056: VAR_005375 (C358R, chain L, )
057: VAR_007986 (C358Y, chain L, )
058: VAR_024519 (A370T, chain L, )
059: VAR_058531 (D374H, chain A, )
060: VAR_058532 (D374Y, chain A, )
061: VAR_005376 (A378D, chain L, )
062: VAR_005377 (L380H, chain L, )
063: VAR_007987 (L380V, chain L, )
064: VAR_008995 (F382L, chain L, )
065: VAR_072846 (T383P, chain L, )
066: VAR_013954 (R385Q, chain L, )
067: VAR_072847 (R385W, chain L, )
068: VAR_005378 (E387K, chain L, )
069: VAR_025454 (H391N, chain A, )
070: VAR_005379 (L393R, chain L, )
071: VAR_062379 (D394G, chain L, )
072: VAR_067282 (G394S, chain A, )
073: VAR_005380 (R395Q, chain L, )
074: VAR_005381 (R395W, chain L, )
075: VAR_005382 (I402T, chain L, )
076: VAR_005383 (V408M, chain L, )
077: VAR_005384 (A410T, chain L, )
078: VAR_007988 (L411V, chain L, )
079: VAR_005385 (D412H, chain L, )
080: VAR_005386 (T413K, chain L, )
081: VAR_025455 (H417Q, chain A, )
082: VAR_005388 (I420M, chain L, )
083: VAR_005387 (I420N, chain L, )
084: VAR_072848 (Y421H, chain L, )
085: VAR_005389 (W422C, chain L, )
086: VAR_021337 (N425S, chain A, )
087: VAR_062380 (I430T, chain L, )
088: VAR_072849 (T433N, chain L, )
089: VAR_021338 (A443T, chain A, )
090: VAR_011863 (V447I, chain L, )
091: VAR_065783 (R450G, chain L, )
092: VAR_005390 (G457R, chain L, )
093: VAR_062381 (L458P, chain L, )
094: VAR_005391 (D461H, chain L, )
095: VAR_005392 (W462R, chain L, )
096: VAR_005394 (H464R, chain L, )
097: VAR_025456 (R469W, chain A, )
098: VAR_072850 (D471N, chain L, )
099: VAR_021339 (I474I, chain A, )
100: VAR_025457 (E482G, chain A, )
101: VAR_073657 (E482Q, chain A, )
102: VAR_058534 (R496W, chain A, )
103: VAR_005395 (V502M, chain L, )
104: VAR_005396 (P505S, chain L, )
105: VAR_025458 (F515L, chain A, )
106: VAR_058535 (A522T, chain A, )
107: VAR_005397 (G525D, chain L, )
108: VAR_005398 (G528D, chain L, )
109: VAR_005399 (N543H, chain L, )
110: VAR_005400 (N543S, chain L, )
111: VAR_005401 (G544V, chain L, )
112: VAR_008996 (L547V, chain L, )
113: VAR_072851 (R553C, chain L, )
114: VAR_072852 (R553H, chain L, )
115: VAR_021340 (H553R, chain A, )
116: VAR_025459 (Q554E, chain A, )
117: VAR_072853 (W556G, chain L, )
118: VAR_072854 (W556S, chain L, )
119: VAR_005402 (D558N, chain L, )
120: VAR_062382 (D558Y, chain L, )
121: VAR_072855 (I564T, chain L, )
122: VAR_005403 (G571E, chain L, )
123: VAR_072856 (R574W, chain L, )
124: VAR_005404 (L578S, chain L, )
125: VAR_072857 (D580H, chain L, )
126: VAR_007989 (P587S, chain L, )
127: VAR_005405 (R612C, chain L, )
128: VAR_058536 (P616L, chain A, )
129: VAR_072858 (V618D, chain L, )
130: VAR_021341 (Q619P, chain A, )
131: VAR_005406 (P628L, chain L, )
132: VAR_005407 (C646Y, chain L, )
133: VAR_005408 (C656R, chain L, )
134: VAR_005409 (L661P, chain L, )
135: VAR_005410 (P664L, chain L, )
136: VAR_013955 (P678L, chain L, )
137: VAR_005412 (D679E, chain L, )
138: VAR_008997 (E693K, chain L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_058520
T
77
I
PCSK9_HUMAN
Polymorphism
---
P
T
77
I
002
UniProt
VAR_058521
R
93
C
PCSK9_HUMAN
Polymorphism
151193009
P
R
93
C
003
UniProt
VAR_058522
G
106
R
PCSK9_HUMAN
Polymorphism
---
P
G
106
R
004
UniProt
VAR_058523
V
114
A
PCSK9_HUMAN
Polymorphism
---
P
V
114
A
005
UniProt
VAR_017199
S
127
R
PCSK9_HUMAN
Disease (HCHOLA3)
28942111
P
S
127
R
006
UniProt
VAR_058524
D
129
G
PCSK9_HUMAN
Disease (HCHOLA3)
---
P
D
129
G
007
UniProt
VAR_058525
N
157
K
PCSK9_HUMAN
Polymorphism
---
A
N
157
K
008
UniProt
VAR_058526
R
215
H
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
R
215
H
009
UniProt
VAR_025452
R
237
W
PCSK9_HUMAN
Polymorphism
---
A
R
237
W
010
UniProt
VAR_058529
A
239
D
PCSK9_HUMAN
Polymorphism
---
A
A
239
D
011
UniProt
VAR_025453
L
253
F
PCSK9_HUMAN
Polymorphism
28362270
A
L
253
F
012
UniProt
VAR_062375
C
276
R
LDLR_HUMAN
Disease (FH)
---
L
C
255
R
013
UniProt
VAR_072837
C
276
W
LDLR_HUMAN
Unclassified
---
L
C
255
W
014
UniProt
VAR_005349
C
276
Y
LDLR_HUMAN
Disease (FH)
---
L
C
255
Y
015
UniProt
VAR_005350
E
277
K
LDLR_HUMAN
Unclassified
148698650
L
E
256
K
016
UniProt
VAR_072838
H
285
Y
LDLR_HUMAN
Unclassified
---
L
H
264
Y
017
UniProt
VAR_005351
S
286
R
LDLR_HUMAN
Unclassified
---
L
S
265
R
018
UniProt
VAR_007983
E
288
K
LDLR_HUMAN
Disease (FH)
---
L
E
267
K
019
UniProt
VAR_072839
R
300
G
LDLR_HUMAN
Disease (FH)
---
L
R
279
G
020
UniProt
VAR_005352
D
301
A
LDLR_HUMAN
Disease (FH)
---
L
D
280
A
021
UniProt
VAR_072840
D
301
G
LDLR_HUMAN
Disease (FH)
---
L
D
280
G
022
UniProt
VAR_005354
C
302
W
LDLR_HUMAN
Disease (FH)
---
L
C
281
W
023
UniProt
VAR_005353
C
302
Y
LDLR_HUMAN
Disease (FH)
---
L
C
281
Y
024
UniProt
VAR_005356
D
304
E
LDLR_HUMAN
Unclassified
---
L
D
283
E
025
UniProt
VAR_005355
D
304
N
LDLR_HUMAN
Unclassified
---
L
D
283
N
026
UniProt
VAR_005357
S
306
L
LDLR_HUMAN
Unclassified
11547917
L
S
285
L
027
UniProt
VAR_005358
C
313
Y
LDLR_HUMAN
Disease (FH)
---
L
C
292
Y
028
UniProt
VAR_072841
G
314
R
LDLR_HUMAN
Unclassified
---
L
G
293
R
029
UniProt
VAR_005360
C
318
F
LDLR_HUMAN
Disease (FH)
---
L
C
297
F
030
UniProt
VAR_062376
C
318
R
LDLR_HUMAN
Disease (FH)
---
L
C
297
R
031
UniProt
VAR_005359
C
318
Y
LDLR_HUMAN
Unclassified
---
L
C
297
Y
032
UniProt
VAR_072842
S
326
C
LDLR_HUMAN
Unclassified
---
L
S
305
C
033
UniProt
VAR_005361
H
327
Y
LDLR_HUMAN
Disease (FH)
---
L
H
306
Y
034
UniProt
VAR_067196
C
329
F
LDLR_HUMAN
Disease (FH)
---
L
C
308
F
035
UniProt
VAR_005362
C
329
Y
LDLR_HUMAN
Disease (FH)
---
L
C
308
Y
036
UniProt
VAR_005363
G
335
S
LDLR_HUMAN
Unclassified
---
L
G
314
S
037
UniProt
VAR_005364
C
338
S
LDLR_HUMAN
Disease (FH)
---
L
C
317
S
038
UniProt
VAR_005365
D
342
E
LDLR_HUMAN
Unclassified
---
L
D
321
E
039
UniProt
VAR_005366
D
342
N
LDLR_HUMAN
Unclassified
139361635
L
D
321
N
040
UniProt
VAR_005367
G
343
S
LDLR_HUMAN
Unclassified
---
L
G
322
S
041
UniProt
VAR_005368
R
350
P
LDLR_HUMAN
Disease (FH)
---
L
R
329
P
042
UniProt
VAR_072843
C
352
R
LDLR_HUMAN
Unclassified
---
L
C
331
R
043
UniProt
VAR_005369
C
352
Y
LDLR_HUMAN
Unclassified
---
L
C
331
Y
044
UniProt
VAR_005370
D
354
G
LDLR_HUMAN
Unclassified
---
L
D
333
G
045
UniProt
VAR_005371
D
354
V
LDLR_HUMAN
Unclassified
---
L
D
333
V
046
UniProt
VAR_007984
D
356
Y
LDLR_HUMAN
Disease (FH)
---
L
D
335
Y
047
UniProt
VAR_005372
E
357
K
LDLR_HUMAN
Unclassified
---
L
E
336
K
048
UniProt
VAR_062377
C
358
Y
LDLR_HUMAN
Disease (FH)
---
L
C
337
Y
049
UniProt
VAR_005373
C
364
R
LDLR_HUMAN
Unclassified
---
L
C
343
R
050
UniProt
VAR_007985
Q
366
R
LDLR_HUMAN
Disease (FH)
---
L
Q
345
R
051
UniProt
VAR_005374
C
368
R
LDLR_HUMAN
Disease (FH)
---
L
C
347
R
052
UniProt
VAR_072844
C
368
Y
LDLR_HUMAN
Unclassified
---
L
C
347
Y
053
UniProt
VAR_062378
N
370
T
LDLR_HUMAN
Disease (FH)
---
L
N
349
T
054
UniProt
VAR_072845
G
373
D
LDLR_HUMAN
Unclassified
---
L
G
352
D
055
UniProt
VAR_058530
R
357
H
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
R
357
H
056
UniProt
VAR_005375
C
379
R
LDLR_HUMAN
Unclassified
---
L
C
358
R
057
UniProt
VAR_007986
C
379
Y
LDLR_HUMAN
Disease (FH)
---
L
C
358
Y
058
UniProt
VAR_024519
A
391
T
LDLR_HUMAN
Polymorphism
11669576
L
A
370
T
059
UniProt
VAR_058531
D
374
H
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
D
374
H
060
UniProt
VAR_058532
D
374
Y
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
D
374
Y
061
UniProt
VAR_005376
A
399
D
LDLR_HUMAN
Disease (FH)
---
L
A
378
D
062
UniProt
VAR_005377
L
401
H
LDLR_HUMAN
Unclassified
---
L
L
380
H
063
UniProt
VAR_007987
L
401
V
LDLR_HUMAN
Disease (FH)
---
L
L
380
V
064
UniProt
VAR_008995
F
403
L
LDLR_HUMAN
Disease (FH)
---
L
F
382
L
065
UniProt
VAR_072846
T
404
P
LDLR_HUMAN
Unclassified
---
L
T
383
P
066
UniProt
VAR_013954
R
406
Q
LDLR_HUMAN
Unclassified
---
L
R
385
Q
067
UniProt
VAR_072847
R
406
W
LDLR_HUMAN
Unclassified
---
L
R
385
W
068
UniProt
VAR_005378
E
408
K
LDLR_HUMAN
Unclassified
---
L
E
387
K
069
UniProt
VAR_025454
H
391
N
PCSK9_HUMAN
Polymorphism
---
A
H
391
N
070
UniProt
VAR_005379
L
414
R
LDLR_HUMAN
Disease (FH)
---
L
L
393
R
071
UniProt
VAR_062379
D
415
G
LDLR_HUMAN
Disease (FH)
---
L
D
394
G
072
UniProt
VAR_067282
G
394
S
PCSK9_HUMAN
Unclassified
---
A
G
394
S
073
UniProt
VAR_005380
R
416
Q
LDLR_HUMAN
Disease (FH)
---
L
R
395
Q
074
UniProt
VAR_005381
R
416
W
LDLR_HUMAN
Disease (FH)
---
L
R
395
W
075
UniProt
VAR_005382
I
423
T
LDLR_HUMAN
Disease (FH)
---
L
I
402
T
076
UniProt
VAR_005383
V
429
M
LDLR_HUMAN
Disease (FH)
28942078
L
V
408
M
077
UniProt
VAR_005384
A
431
T
LDLR_HUMAN
Unclassified
28942079
L
A
410
T
078
UniProt
VAR_007988
L
432
V
LDLR_HUMAN
Disease (FH)
---
L
L
411
V
079
UniProt
VAR_005385
D
433
H
LDLR_HUMAN
Disease (FH)
---
L
D
412
H
080
UniProt
VAR_005386
T
434
K
LDLR_HUMAN
Unclassified
---
L
T
413
K
081
UniProt
VAR_025455
H
417
Q
PCSK9_HUMAN
Polymorphism
143275858
A
H
417
Q
082
UniProt
VAR_005388
I
441
M
LDLR_HUMAN
Unclassified
---
L
I
420
M
083
UniProt
VAR_005387
I
441
N
LDLR_HUMAN
Unclassified
---
L
I
420
N
084
UniProt
VAR_072848
Y
442
H
LDLR_HUMAN
Unclassified
---
L
Y
421
H
085
UniProt
VAR_005389
W
443
C
LDLR_HUMAN
Unclassified
---
L
W
422
C
086
UniProt
VAR_021337
N
425
S
PCSK9_HUMAN
Polymorphism
28362261
A
N
425
S
087
UniProt
VAR_062380
I
451
T
LDLR_HUMAN
Disease (FH)
---
L
I
430
T
088
UniProt
VAR_072849
T
454
N
LDLR_HUMAN
Disease (FH)
---
L
T
433
N
089
UniProt
VAR_021338
A
443
T
PCSK9_HUMAN
Polymorphism
28362263
A
A
443
T
090
UniProt
VAR_011863
V
468
I
LDLR_HUMAN
Polymorphism
5932
L
V
447
I
091
UniProt
VAR_065783
R
471
G
LDLR_HUMAN
Unclassified
---
L
R
450
G
092
UniProt
VAR_005390
G
478
R
LDLR_HUMAN
Unclassified
---
L
G
457
R
093
UniProt
VAR_062381
L
479
P
LDLR_HUMAN
Disease (FH)
---
L
L
458
P
094
UniProt
VAR_005391
D
482
H
LDLR_HUMAN
Disease (FH)
---
L
D
461
H
095
UniProt
VAR_005392
W
483
R
LDLR_HUMAN
Disease (FH)
---
L
W
462
R
096
UniProt
VAR_005394
H
485
R
LDLR_HUMAN
Unclassified
---
L
H
464
R
097
UniProt
VAR_025456
R
469
W
PCSK9_HUMAN
Polymorphism
141502002
A
R
469
W
098
UniProt
VAR_072850
D
492
N
LDLR_HUMAN
Unclassified
---
L
D
471
N
099
UniProt
VAR_021339
V
474
I
PCSK9_HUMAN
Polymorphism
562556
A
I
474
I
100
UniProt
VAR_025457
E
482
G
PCSK9_HUMAN
Polymorphism
---
A
E
482
G
101
UniProt
VAR_073657
E
482
Q
PCSK9_HUMAN
Unclassified
---
A
E
482
Q
102
UniProt
VAR_058534
R
496
W
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
R
496
W
103
UniProt
VAR_005395
V
523
M
LDLR_HUMAN
Disease (FH)
28942080
L
V
502
M
104
UniProt
VAR_005396
P
526
S
LDLR_HUMAN
Unclassified
---
L
P
505
S
105
UniProt
VAR_025458
F
515
L
PCSK9_HUMAN
Polymorphism
---
A
F
515
L
106
UniProt
VAR_058535
A
522
T
PCSK9_HUMAN
Polymorphism
---
A
A
522
T
107
UniProt
VAR_005397
G
546
D
LDLR_HUMAN
Polymorphism
28942081
L
G
525
D
108
UniProt
VAR_005398
G
549
D
LDLR_HUMAN
Disease (FH)
28941776
L
G
528
D
109
UniProt
VAR_005399
N
564
H
LDLR_HUMAN
Disease (FH)
28942086
L
N
543
H
110
UniProt
VAR_005400
N
564
S
LDLR_HUMAN
Disease (FH)
---
L
N
543
S
111
UniProt
VAR_005401
G
565
V
LDLR_HUMAN
Polymorphism
28942082
L
G
544
V
112
UniProt
VAR_008996
L
568
V
LDLR_HUMAN
Disease (FH)
---
L
L
547
V
113
UniProt
VAR_072851
R
574
C
LDLR_HUMAN
Disease (FH)
---
L
R
553
C
114
UniProt
VAR_072852
R
574
H
LDLR_HUMAN
Unclassified
---
L
R
553
H
115
UniProt
VAR_021340
H
553
R
PCSK9_HUMAN
Polymorphism
28362270
A
H
553
R
116
UniProt
VAR_025459
Q
554
E
PCSK9_HUMAN
Polymorphism
149311926
A
Q
554
E
117
UniProt
VAR_072853
W
577
G
LDLR_HUMAN
Disease (FH)
---
L
W
556
G
118
UniProt
VAR_072854
W
577
S
LDLR_HUMAN
Unclassified
---
L
W
556
S
119
UniProt
VAR_005402
D
579
N
LDLR_HUMAN
Disease (FH)
---
L
D
558
N
120
UniProt
VAR_062382
D
579
Y
LDLR_HUMAN
Disease (FH)
---
L
D
558
Y
121
UniProt
VAR_072855
I
585
T
LDLR_HUMAN
Unclassified
---
L
I
564
T
122
UniProt
VAR_005403
G
592
E
LDLR_HUMAN
Disease (FH)
---
L
G
571
E
123
UniProt
VAR_072856
R
595
W
LDLR_HUMAN
Unclassified
---
L
R
574
W
124
UniProt
VAR_005404
L
599
S
LDLR_HUMAN
Unclassified
---
L
L
578
S
125
UniProt
VAR_072857
D
601
H
LDLR_HUMAN
Unclassified
---
L
D
580
H
126
UniProt
VAR_007989
P
608
S
LDLR_HUMAN
Disease (FH)
---
L
P
587
S
127
UniProt
VAR_005405
R
633
C
LDLR_HUMAN
Disease (FH)
---
L
R
612
C
128
UniProt
VAR_058536
P
616
L
PCSK9_HUMAN
Polymorphism
---
A
P
616
L
129
UniProt
VAR_072858
V
639
D
LDLR_HUMAN
Disease (FH)
---
L
V
618
D
130
UniProt
VAR_021341
Q
619
P
PCSK9_HUMAN
Polymorphism
28362277
A
Q
619
P
131
UniProt
VAR_005406
P
649
L
LDLR_HUMAN
Disease (FH)
---
L
P
628
L
132
UniProt
VAR_005407
C
667
Y
LDLR_HUMAN
Disease (FH)
28942083
L
C
646
Y
133
UniProt
VAR_005408
C
677
R
LDLR_HUMAN
Disease (FH)
---
L
C
656
R
134
UniProt
VAR_005409
L
682
P
LDLR_HUMAN
Unclassified
---
L
L
661
P
135
UniProt
VAR_005410
P
685
L
LDLR_HUMAN
Disease (FH)
28942084
L
P
664
L
136
UniProt
VAR_013955
P
699
L
LDLR_HUMAN
Unclassified
---
L
P
678
L
137
UniProt
VAR_005412
D
700
E
LDLR_HUMAN
Disease (FH)
---
L
D
679
E
138
UniProt
VAR_008997
E
714
K
LDLR_HUMAN
Disease (FH)
---
L
E
693
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 13)
Info
All PROSITE Patterns/Profiles
1: LDLRA_1 (-|-|-|-|-|-|L:268-292)
2: EGF_3 (L:293-332|L:333-372)
3: ASX_HYDROXYL (L:308-319|L:347-358)
4: EGF_2 (L:317-331|L:356-371)
5: EGF_CA (L:333-356)
6: LDLRB (L:418-464|L:465-507|L:508-551|L:55...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
LDLR_HUMAN
39-63
82-104
121-143
160-184
209-231
248-270
289-313
1
-
-
-
-
-
-
L:268-292
2
EGF_3
PS50026
EGF-like domain profile.
LDLR_HUMAN
314-353
354-393
2
L:293-332
L:333-372
3
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
LDLR_HUMAN
329-340
368-379
2
L:308-319
L:347-358
4
EGF_2
PS01186
EGF-like domain signature 2.
LDLR_HUMAN
338-352
377-392
2
L:317-331
L:356-371
5
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
LDLR_HUMAN
354-377
1
L:333-356
6
LDLRB
PS51120
LDL-receptor class B (LDLRB) repeat profile.
LDLR_HUMAN
439-485
486-528
529-572
573-617
618-658
5
L:418-464
L:465-507
L:508-551
L:552-596
L:597-637
[
close PROSITE info
]
Exons
(12, 13)
Info
All Exons
Exon 1.1b (- | P:61-69)
Exon 1.2 (- | P:70-133)
Exon 1.3 (A:153-172 | P:134-152)
Exon 1.4c (A:179-215 | -)
Exon 1.5 (A:223-267 | -)
Exon 1.6 (A:267-332 | -)
Exon 1.7a (A:333-394 | -)
Exon 1.8 (A:394-449 | -)
Exon 1.9 (A:453-501 | -)
Exon 1.10 (A:502-561 | -)
Exon 1.11 (A:561-621 (gaps) | -)
Exon 1.12b (A:622-682 (gaps) | -)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4c
05: Boundary 1.4c/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7a
08: Boundary 1.7a/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12b
13: Boundary 1.12b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000302118
1b
ENSE00001884398
chr1:
55505221-55505717
497
PCSK9_HUMAN
1-69
69
1
-
P:61-69
-
9
1.2
ENST00000302118
2
ENSE00001279167
chr1:
55509516-55509707
192
PCSK9_HUMAN
70-133
64
1
-
P:70-133
-
64
1.3
ENST00000302118
3
ENSE00001279161
chr1:
55512196-55512319
124
PCSK9_HUMAN
134-175
42
2
A:153-172
P:134-152
20
19
1.4c
ENST00000302118
4c
ENSE00001279157
chr1:
55517951-55518084
134
PCSK9_HUMAN
175-219
45
1
A:179-215
-
37
-
1.5
ENST00000302118
5
ENSE00001279150
chr1:
55518323-55518464
142
PCSK9_HUMAN
220-267
48
1
A:223-267
-
45
-
1.6
ENST00000302118
6
ENSE00001279145
chr1:
55521666-55521862
197
PCSK9_HUMAN
267-332
66
1
A:267-332
-
66
-
1.7a
ENST00000302118
7a
ENSE00001156685
chr1:
55523004-55523187
184
PCSK9_HUMAN
333-394
62
1
A:333-394
-
62
-
1.8
ENST00000302118
8
ENSE00001139624
chr1:
55523709-55523882
174
PCSK9_HUMAN
394-452
59
1
A:394-449
-
56
-
1.9
ENST00000302118
9
ENSE00001279131
chr1:
55524172-55524320
149
PCSK9_HUMAN
452-501
50
1
A:453-501
-
49
-
1.10
ENST00000302118
10
ENSE00001338737
chr1:
55525159-55525336
178
PCSK9_HUMAN
502-561
60
1
A:502-561
-
60
-
1.11
ENST00000302118
11
ENSE00001338722
chr1:
55527048-55527229
182
PCSK9_HUMAN
561-621
61
1
A:561-621 (gaps)
-
61
-
1.12b
ENST00000302118
12b
ENSE00001922690
chr1:
55529042-55530525
1484
PCSK9_HUMAN
622-692
71
1
A:622-682 (gaps)
-
61
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Info
all PFAM domains
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Atom Selection
(currently selected atoms:
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Asymmetric Unit 1
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