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3P56
Asym. Unit
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Asym.Unit (333 KB)
Biol.Unit 1 (168 KB)
Biol.Unit 2 (160 KB)
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Title
:
THE STRUCTURE OF THE HUMAN RNASE H2 COMPLEX DEFINES KEY INTERACTION INTERFACES RELEVANT TO ENZYME FUNCTION AND HUMAN DISEASE
Authors
:
D. Bubeck, S. C. Graham, E. Y. Jones
Date
:
08 Oct 10 (Deposition) - 17 Nov 10 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.06
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Rnase H Fold, Triple Beta-Barrel, Nuclease That Cleaves Rna/Dna Hybrids, Proliferating Cell Nuclear Antigen (Pcna) And Rna/Dna Hybrids, Nucleus, Hydrolase-Replication Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Reijns, D. Bubeck, L. C. Gibson, S. C. Graham, G. S. Baillie, E. Y. Jones, A. P. Jackson
The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Huma Disease.
J. Biol. Chem. V. 286 10530 2011
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(27, 54)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_027377 (G37S, chain A/D, )
02: VAR_070619 (D39Y, chain C/F, )
03: VAR_070611 (P43H, chain B/E, )
04: VAR_027280 (L60R, chain B/E, )
05: VAR_027287 (R69W, chain C/F, )
06: VAR_070612 (W73L, chain B/E, )
07: VAR_070620 (P76L, chain C/F, )
08: VAR_070613 (G83S, chain B/E, )
09: VAR_027281 (H86R, chain B/E, )
10: VAR_070624 (N99D, chain A/D, )
11: VAR_070625 (R108W, chain A/D, )
12: VAR_070614 (L138F, chain B/E, )
13: VAR_070621 (P138L, chain C/F, )
14: VAR_027288 (K143I, chain C/F, )
15: VAR_070622 (P151S, chain C/F, )
16: VAR_070615 (S159I, chain B/E, )
17: VAR_027282 (K162T, chain B/E, )
18: VAR_027283 (T163I, chain B/E, )
19: VAR_027284 (A177T, chain B/E, )
20: VAR_070616 (V183M, chain B/E, )
21: VAR_070626 (R186W, chain A/D, )
22: VAR_070627 (D205E, chain A/D, )
23: VAR_027286 (Y219H, chain B/E, )
24: VAR_070628 (F230L, chain A/D, )
25: VAR_070629 (R235Q, chain A/D, )
26: VAR_070630 (T240M, chain A/D, )
27: VAR_070632 (R291H, chain A/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_027377
G
37
S
RNH2A_HUMAN
Disease (AGS4)
---
A/D
G
37
S
02
UniProt
VAR_070619
D
39
Y
RNH2C_HUMAN
Disease (AGS3)
---
C/F
D
39
Y
03
UniProt
VAR_070611
P
43
H
RNH2B_HUMAN
Disease (AGS2)
---
B/E
P
43
H
04
UniProt
VAR_027280
L
60
R
RNH2B_HUMAN
Disease (AGS2)
---
B/E
L
60
R
05
UniProt
VAR_027287
R
69
W
RNH2C_HUMAN
Disease (AGS3)
---
C/F
R
69
W
06
UniProt
VAR_070612
W
73
L
RNH2B_HUMAN
Disease (AGS2)
---
B/E
W
73
L
07
UniProt
VAR_070620
P
76
L
RNH2C_HUMAN
Disease (AGS3)
---
C/F
P
76
L
08
UniProt
VAR_070613
G
83
S
RNH2B_HUMAN
Disease (AGS2)
---
B/E
G
83
S
09
UniProt
VAR_027281
H
86
R
RNH2B_HUMAN
Disease (AGS2)
---
B/E
H
86
R
10
UniProt
VAR_070624
N
99
D
RNH2A_HUMAN
Polymorphism
---
A/D
N
99
D
11
UniProt
VAR_070625
R
108
W
RNH2A_HUMAN
Disease (AGS4)
---
A/D
R
108
W
12
UniProt
VAR_070614
L
138
F
RNH2B_HUMAN
Disease (AGS2)
---
B/E
L
138
F
13
UniProt
VAR_070621
P
138
L
RNH2C_HUMAN
Disease (AGS3)
---
C/F
P
138
L
14
UniProt
VAR_027288
K
143
I
RNH2C_HUMAN
Disease (AGS3)
---
C/F
K
143
I
15
UniProt
VAR_070622
P
151
S
RNH2C_HUMAN
Disease (AGS3)
---
C/F
P
151
S
16
UniProt
VAR_070615
S
159
I
RNH2B_HUMAN
Disease (AGS2)
---
B/E
S
159
I
17
UniProt
VAR_027282
K
162
T
RNH2B_HUMAN
Disease (AGS2)
---
B/E
K
162
T
18
UniProt
VAR_027283
T
163
I
RNH2B_HUMAN
Disease (AGS2)
---
B/E
T
163
I
19
UniProt
VAR_027284
A
177
T
RNH2B_HUMAN
Disease (AGS2)
---
B/E
A
177
T
20
UniProt
VAR_070616
V
183
M
RNH2B_HUMAN
Disease (AGS2)
---
B/E
V
183
M
21
UniProt
VAR_070626
R
186
W
RNH2A_HUMAN
Disease (AGS4)
---
A/D
R
186
W
22
UniProt
VAR_070627
D
205
E
RNH2A_HUMAN
Polymorphism
---
A/D
D
205
E
23
UniProt
VAR_027286
Y
219
H
RNH2B_HUMAN
Disease (AGS2)
---
B/E
Y
219
H
24
UniProt
VAR_070628
F
230
L
RNH2A_HUMAN
Disease (AGS4)
---
A/D
F
230
L
25
UniProt
VAR_070629
R
235
Q
RNH2A_HUMAN
Disease (AGS4)
---
A/D
R
235
Q
26
UniProt
VAR_070630
T
240
M
RNH2A_HUMAN
Disease (AGS4)
---
A/D
T
240
M
27
UniProt
VAR_070632
R
291
H
RNH2A_HUMAN
Disease (AGS4)
---
A/D
R
291
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_RNase_HII_3p56D01 (D:31-241)
1b: PFAM_RNase_HII_3p56D02 (D:31-241)
2a: PFAM_RNase_H2_Ydr279_3p56E01 (E:14-226)
2b: PFAM_RNase_H2_Ydr279_3p56E02 (E:14-226)
3a: PFAM_RNase_H2_suC_3p56F01 (F:28-157)
3b: PFAM_RNase_H2_suC_3p56F02 (F:28-157)
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Clans
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Families
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Organisms
(
)
(
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Clan
:
RNase_H
(288)
Family
:
RNase_HII
(8)
Homo sapiens (Human)
(1)
1a
RNase_HII-3p56D01
D:31-241
1b
RNase_HII-3p56D02
D:31-241
Clan
:
no clan defined [family: RNase_H2-Ydr279]
(4)
Family
:
RNase_H2-Ydr279
(4)
Homo sapiens (Human)
(2)
2a
RNase_H2-Ydr279-3p56E01
E:14-226
2b
RNase_H2-Ydr279-3p56E02
E:14-226
Clan
:
no clan defined [family: RNase_H2_suC]
(3)
Family
:
RNase_H2_suC
(3)
Homo sapiens (Human)
(1)
3a
RNase_H2_suC-3p56F01
F:28-157
3b
RNase_H2_suC-3p56F02
F:28-157
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Asym.Unit (333 KB)
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