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Getting 'Exon' information from database.
3P35
Asym. Unit
Info
Asym.Unit (237 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (80 KB)
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(1)
Title
:
POLO-LIKE KINASE I POLO-BOX DOMAIN IN COMPLEX WITH MQSPSPL PHOSPHOPEPTIDE
Authors
:
P. Sledz, M. Hyvonen, C. Abell
Date
:
04 Oct 10 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C (1x)
Keywords
:
Phosphoprotein Binding Domain, Plk1, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sledz, C. J. Stubbs, S. Lang, Y. Q. Yang, G. J. Mckenzie, A. R. Venkitaraman, M. Hyvonen, C. Abell
From Crystal Packing To Molecular Recognition: Prediction And Discovery Of A Binding Site On The Surface Of Polo-Like Kinase 1
Angew. Chem. Int. Ed. Engl. V. 50 4003 2011
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: AMINO GROUP (NH2a)
3b: AMINO GROUP (NH2b)
4a: PHOSPHOSERINE (SEPa)
4b: PHOSPHOSERINE (SEPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
GOL
5
Ligand/Ion
GLYCEROL
3
NH2
2
Mod. Amino Acid
AMINO GROUP
4
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:385 , PRO A:389 , ALA A:577 , ARG A:581 , GLU B:504
BINDING SITE FOR RESIDUE GOL A 595
2
AC2
SOFTWARE
ARG A:507 , LEU A:508 , TYR A:510 , SER A:526 , GLN B:536 , ASP B:537 , HIS B:538
BINDING SITE FOR RESIDUE GOL A 596
3
AC3
SOFTWARE
THR B:459 , GLU B:460 , HOH B:601 , HOH C:10 , TRP C:414 , LEU C:490
BINDING SITE FOR RESIDUE GOL B 595
4
AC4
SOFTWARE
LEU B:566 , GLU B:569
BINDING SITE FOR RESIDUE GOL B 596
5
AC5
SOFTWARE
TYR B:421 , PHE B:436 , ASN B:437 , ASP B:438 , LYS B:475 , HOH B:598
BINDING SITE FOR RESIDUE GOL B 597
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SAPs(SNPs)/Variants
(2, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041021 (L463H, chain A/B/C, )
2: VAR_041022 (R518H, chain A/B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041021
L
463
H
PLK1_HUMAN
Polymorphism
45569335
A/B/C
L
463
H
2
UniProt
VAR_041022
R
518
H
PLK1_HUMAN
Polymorphism
56027600
A/B/C
R
518
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: POLO_BOX (A:417-480,B:417-480,C:417-480|A:51...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLO_BOX
PS50078
POLO box domain profile.
PLK1_HUMAN
417-480
515-584
6
A:417-480
B:417-480
C:417-480
A:515-584
B:515-584
C:515-584
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Exons
(5, 15)
Info
All Exons
Exon 1.6 (A:372-398 | B:372-398 | C:372-398)
Exon 1.7 (A:398-424 | B:398-424 | C:398-424)
Exon 1.8 (A:424-475 | B:424-475 | C:424-475)
Exon 1.9 (A:476-536 (gaps) | B:476-536 | C:4...)
Exon 1.10a (A:537-594 | B:537-593 | C:537-593)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300093
1a
ENSE00001107240
chr16:
23690143-23690661
519
PLK1_HUMAN
1-136
136
0
-
-
1.2b
ENST00000300093
2b
ENSE00001107217
chr16:
23691405-23691573
169
PLK1_HUMAN
137-193
57
0
-
-
1.3b
ENST00000300093
3b
ENSE00001107239
chr16:
23692235-23692379
145
PLK1_HUMAN
193-241
49
0
-
-
1.4
ENST00000300093
4
ENSE00001107237
chr16:
23693385-23693478
94
PLK1_HUMAN
241-272
32
0
-
-
1.5
ENST00000300093
5
ENSE00001107229
chr16:
23695191-23695410
220
PLK1_HUMAN
273-346
74
0
-
-
1.6
ENST00000300093
6
ENSE00001107234
chr16:
23698790-23698945
156
PLK1_HUMAN
346-398
53
3
A:372-398
B:372-398
C:372-398
27
27
27
1.7
ENST00000300093
7
ENSE00001107238
chr16:
23699989-23700066
78
PLK1_HUMAN
398-424
27
3
A:398-424
B:398-424
C:398-424
27
27
27
1.8
ENST00000300093
8
ENSE00001107241
chr16:
23700559-23700713
155
PLK1_HUMAN
424-475
52
3
A:424-475
B:424-475
C:424-475
52
52
52
1.9
ENST00000300093
9
ENSE00001107222
chr16:
23700815-23700997
183
PLK1_HUMAN
476-536
61
3
A:476-536 (gaps)
B:476-536
C:476-536
61
61
61
1.10a
ENST00000300093
10a
ENSE00001107226
chr16:
23701181-23701688
508
PLK1_HUMAN
537-603
67
3
A:537-594
B:537-593
C:537-593
58
57
57
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_POLO_box_3p35C01 (C:515-584)
1b: PFAM_POLO_box_3p35C02 (C:515-584)
1c: PFAM_POLO_box_3p35C03 (C:515-584)
1d: PFAM_POLO_box_3p35C04 (C:515-584)
1e: PFAM_POLO_box_3p35C05 (C:515-584)
1f: PFAM_POLO_box_3p35C06 (C:515-584)
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Clans
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)
Organisms
(
)
(
)
Clan
:
no clan defined [family: POLO_box]
(13)
Family
:
POLO_box
(13)
Homo sapiens (Human)
(12)
1a
POLO_box-3p35C01
C:515-584
1b
POLO_box-3p35C02
C:515-584
1c
POLO_box-3p35C03
C:515-584
1d
POLO_box-3p35C04
C:515-584
1e
POLO_box-3p35C05
C:515-584
1f
POLO_box-3p35C06
C:515-584
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Asym.Unit (237 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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