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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
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Asym. Unit
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Asym.Unit (46 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
UNLIGANDED FORM OF POLO-LIKE KINASE I POLO-BOX DOMAIN
Authors
:
P. Sledz, M. Hyvonen, C. Abell
Date
:
04 Oct 10 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphoprotein Binding Domain, Plk1, Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sledz, C. J. Stubbs, S. Lang, Y. Q. Yang, G. J. Mckenzie, A. R. Venkitaraman, M. Hyvonen, C. Abell
From Crystal Packing To Molecular Recognition: Prediction And Discovery Of A Binding Site On The Surface Of Polo-Like Kinase 1
Angew. Chem. Int. Ed. Engl. V. 50 4003 2011
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:28 , HOH A:51 , TYR A:421 , PHE A:436 , ASN A:437 , ASP A:438 , LYS A:475
BINDING SITE FOR RESIDUE SO4 A 595
2
AC2
SOFTWARE
HOH A:40 , THR A:517 , ARG A:518 , SER A:519 , TYR A:582
BINDING SITE FOR RESIDUE SO4 A 596
3
AC3
SOFTWARE
HOH A:120 , HOH A:136 , TYR A:462 , GOL A:599
BINDING SITE FOR RESIDUE GOL A 597
4
AC4
SOFTWARE
HOH A:32 , HOH A:232 , LYS A:413 , TRP A:414 , GLU A:460
BINDING SITE FOR RESIDUE GOL A 598
5
AC5
SOFTWARE
HOH A:116 , HOH A:122 , HOH A:145 , SER A:450 , LEU A:451 , TYR A:462 , LEU A:463 , ARG A:518 , GOL A:597
BINDING SITE FOR RESIDUE GOL A 599
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041021 (L463H, chain A, )
2: VAR_041022 (R518H, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041021
L
463
H
PLK1_HUMAN
Polymorphism
45569335
A
L
463
H
2
UniProt
VAR_041022
R
518
H
PLK1_HUMAN
Polymorphism
56027600
A
R
518
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: POLO_BOX (A:417-480|A:515-584)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLO_BOX
PS50078
POLO box domain profile.
PLK1_HUMAN
417-480
515-584
2
A:417-480
A:515-584
[
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Exons
(5, 5)
Info
All Exons
Exon 1.6 (A:8-398 (gaps))
Exon 1.7 (A:398-424)
Exon 1.8 (A:424-475)
Exon 1.9 (A:476-536 (gaps))
Exon 1.10a (A:537-594)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300093
1a
ENSE00001107240
chr16:
23690143-23690661
519
PLK1_HUMAN
1-136
136
0
-
-
1.2b
ENST00000300093
2b
ENSE00001107217
chr16:
23691405-23691573
169
PLK1_HUMAN
137-193
57
0
-
-
1.3b
ENST00000300093
3b
ENSE00001107239
chr16:
23692235-23692379
145
PLK1_HUMAN
193-241
49
0
-
-
1.4
ENST00000300093
4
ENSE00001107237
chr16:
23693385-23693478
94
PLK1_HUMAN
241-272
32
0
-
-
1.5
ENST00000300093
5
ENSE00001107229
chr16:
23695191-23695410
220
PLK1_HUMAN
273-346
74
0
-
-
1.6
ENST00000300093
6
ENSE00001107234
chr16:
23698790-23698945
156
PLK1_HUMAN
346-398
53
1
A:8-398 (gaps)
30
1.7
ENST00000300093
7
ENSE00001107238
chr16:
23699989-23700066
78
PLK1_HUMAN
398-424
27
1
A:398-424
27
1.8
ENST00000300093
8
ENSE00001107241
chr16:
23700559-23700713
155
PLK1_HUMAN
424-475
52
1
A:424-475
52
1.9
ENST00000300093
9
ENSE00001107222
chr16:
23700815-23700997
183
PLK1_HUMAN
476-536
61
1
A:476-536 (gaps)
61
1.10a
ENST00000300093
10a
ENSE00001107226
chr16:
23701181-23701688
508
PLK1_HUMAN
537-603
67
1
A:537-594
58
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3p2wa1 (A:8-494)
1b: SCOP_d3p2wa2 (A:507-594)
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Classes
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Polo-box domain
(18)
Superfamily
:
Polo-box domain
(18)
Family
:
Polo-box duplicated region
(17)
Protein domain
:
Serine/threonine-protein kinase plk C-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3p2wa1
A:8-494
1b
d3p2wa2
A:507-594
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_POLO_box_3p2wA01 (A:515-584)
1b: PFAM_POLO_box_3p2wA02 (A:515-584)
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Clans
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Organisms
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)
(
)
Clan
:
no clan defined [family: POLO_box]
(13)
Family
:
POLO_box
(13)
Homo sapiens (Human)
(12)
1a
POLO_box-3p2wA01
A:515-584
1b
POLO_box-3p2wA02
A:515-584
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Chain A
Asymmetric Unit 1
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Asym.Unit (46 KB)
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