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3P27
Biol. Unit 1
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Asym.Unit (152 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S. CEREVISIAE HBS1 PROTEIN (GDP-BOUND FORM), A TRANSLATIONAL GTPASE INVOLVED IN RNA QUALITY CONTROL PATHWAYS AND INTERACTING WITH DOM34/PELOTA
Authors
:
A. Van Den Elzen, J. Henri, N. Lazar, M. E. Gas, D. Durand, F. Lacroute, M. Nicaise, H. Van Tilbeurgh, B. Sraphin, M. Graille, Paris-Sud Yea Structural Genomics (Ysg)
Date
:
01 Oct 10 (Deposition) - 17 Nov 10 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gdp/Gtp Binding Domain, Beta-Barrel, Translational Gtpase, Structural Genomics, Paris-Sud Yeast Structural Genomics, Ysg, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
A. M. Van Den Elzen, J. Henri, N. Lazar, M. E. Gas, D. Durand, F. Lacroute, M. Nicaise, H. Van Tilbeurgh, B. Seraphin, M. Graille
Dissection Of Dom34-Hbs1 Reveals Independent Functions In Two Rna Quality Control Pathways.
Nat. Struct. Mol. Biol. V. 17 1446 2010
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Hetero Components
(2, 10)
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All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
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No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:175 , VAL A:176 , ASP A:177 , ALA A:178 , GLY A:179 , LYS A:180 , SER A:181 , THR A:182 , ASN A:313 , LYS A:314 , ASP A:316 , ASN A:317 , SER A:352 , GLY A:353 , PHE A:354
BINDING SITE FOR RESIDUE GDP A 663
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
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1: G_TR_1 (A:221-236)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
HBS1_YEAST
221-236
1
A:221-236
-
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Exons
(0, 0)
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GTP_EFTU_3p27B01 (B:165-410)
1b: PFAM_GTP_EFTU_3p27B02 (B:165-410)
2a: PFAM_GTP_EFTU_D2_3p27B03 (B:419-493)
2b: PFAM_GTP_EFTU_D2_3p27B04 (B:419-493)
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Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
GTP_EFTU-3p27B01
B:165-410
1b
GTP_EFTU-3p27B02
B:165-410
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
GTP_EFTU_D2-3p27B03
B:419-493
2b
GTP_EFTU_D2-3p27B04
B:419-493
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