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3P20
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (174 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VANADATE BOUND SUBUNIT A OF THE A1AO ATP SYNTHASE
Authors
:
M. S. S. Manimekalai, A. Kumar, J. Jeyakanthan, G. Gruber
Date
:
01 Oct 10 (Deposition) - 30 Mar 11 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Atp Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Manimekalai, A. Kumar, J. Jeyakanthan, G. Gruber
The Transition-Like State And Pi Entrance Into The Catalyti A Subunit Of The Biological Engine A-Atp Synthase.
J. Mol. Biol. V. 408 736 2011
(for further references see the
PDB file header
)
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4a: VANADATE ION (VO4a)
4b: VANADATE ION (VO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4
VO4
2
Ligand/Ion
VANADATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:233 , SER A:238 , LYS A:240 , THR A:241 , LEU A:417
BINDING SITE FOR RESIDUE VO4 A 589
02
AC2
SOFTWARE
PRO A:233 , LEU A:417
BINDING SITE FOR RESIDUE VO4 A 590
03
AC3
SOFTWARE
ALA A:391
BINDING SITE FOR RESIDUE ACY A 591
04
AC4
SOFTWARE
GLU A:183 , ILE A:184 , LEU A:550 , LEU A:582 , HOH A:644
BINDING SITE FOR RESIDUE MPD A 592
05
AC5
SOFTWARE
THR A:241 , VAL A:242 , THR A:243 , PHE A:427 , PRO A:428 , ALA A:429
BINDING SITE FOR RESIDUE ACY A 593
06
AC6
SOFTWARE
GLN A:246 , LYS A:249 , ALA A:507
BINDING SITE FOR RESIDUE MPD A 594
07
AC7
SOFTWARE
ALA A:337 , PRO A:402 , VAL A:403 , ASN A:406
BINDING SITE FOR RESIDUE MPD A 595
08
AC8
SOFTWARE
ASN A:431 , TRP A:432 , LEU A:433 , HOH A:664
BINDING SITE FOR RESIDUE ACY A 596
09
AC9
SOFTWARE
LYS A:461 , ASP A:532
BINDING SITE FOR RESIDUE ACY A 597
10
BC1
SOFTWARE
TRP A:250 , GLU A:510 , VAL A:511 , TYR A:514 , ARG A:563 , HOH A:640
BINDING SITE FOR RESIDUE TRS A 598
11
BC2
SOFTWARE
GLY A:323 , ASP A:325 , VAL A:383
BINDING SITE FOR RESIDUE ACY A 599
12
BC3
SOFTWARE
ASN A:539 , ARG A:553 , GLU A:554
BINDING SITE FOR RESIDUE ACY A 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: INTEIN_C_TER (A:241-241)
2: ATPASE_ALPHA_BETA (A:428-437)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTEIN_C_TER
PS50818
Intein C-terminal splicing motif profile.
VATA_PYRHO
594-617
1
A:241-241
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
VATA_PYRHO
804-813
1
A:428-437
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_3p20A01 (A:241-437)
1b: PFAM_ATP_synt_ab_3p20A02 (A:241-437)
2a: PFAM_ATP_synt_ab_C_3p20A03 (A:456-588)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(6)
1a
ATP-synt_ab-3p20A01
A:241-437
1b
ATP-synt_ab-3p20A02
A:241-437
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(6)
2a
ATP-synt_ab_C-3p20A03
A:456-588
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Chain A
Asymmetric Unit 1
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Asym.Unit (181 KB)
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