PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3P1A
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (100 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN MEMBRANE-ASSOCIATED TYROSINE- AND THREONINE-SPECIFIC CDC2-INHIBITORY KINASE MYT1 (PKMYT1)
Authors
:
A. Chaikuad, J. Eswaran, O. Fedorov, C. D. O. Cooper, T. Kroeler, M. Voll T. Krojer, G. Berridge, J. R. C. Muniz, A. C. W. Pike, F. Von Delft, J. We C. H. Arrowsmith, A. M. Edwards, C. Bountra, S. Knapp, Structural Gen Consortium (Sgc)
Date
:
30 Sep 10 (Deposition) - 03 Nov 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Protein Kinase, Tyrosine- And Threonine-Specific Kinase, Membrane-Associated Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, J. Eswaran, O. Fedorov, C. D. O. Cooper, T. Kroeler, M. Vollmar, T. Krojer, G. Berridge, J. R. C. Muniz, A. C. W. Pike, F. Von Delft, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, S. Knapp
Structure Of Human Membrane-Associated Tyrosine- And Threonine-Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
To Be Published
[
close entry info
]
Hetero Components
(2, 12)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DMS A:14 , ARG A:112 , SER A:114 , GLY A:309 , GLN A:313 , HOH A:373
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
VAL A:171 , THR A:187 , GLU A:188 , CYS A:190 , HOH A:461
BINDING SITE FOR RESIDUE EDO A 2
03
AC3
SOFTWARE
PRO A:321 , HOH A:389
BINDING SITE FOR RESIDUE EDO A 3
04
AC4
SOFTWARE
LYS A:130 , GLU A:131 , GLU A:351 , HOH A:622
BINDING SITE FOR RESIDUE EDO A 5
05
AC5
SOFTWARE
ARG A:80 , SER A:83 , PHE A:84
BINDING SITE FOR RESIDUE EDO A 7
06
AC6
SOFTWARE
DMS A:14 , GLU A:123 , PHE A:125 , TRP A:312 , GLN A:313
BINDING SITE FOR RESIDUE EDO A 8
07
AC7
SOFTWARE
SER A:143 , PRO A:144 , SER A:204 , CYS A:301 , ASN A:302 , HOH A:386 , HOH A:543
BINDING SITE FOR RESIDUE EDO A 9
08
AC8
SOFTWARE
GLU A:310 , GLU A:331 , HOH A:365 , HOH A:478
BINDING SITE FOR RESIDUE EDO A 11
09
AC9
SOFTWARE
PRO A:148 , GLU A:304 , PRO A:306 , HOH A:376 , HOH A:396 , HOH A:427
BINDING SITE FOR RESIDUE EDO A 12
10
BC1
SOFTWARE
LYS A:139 , ASP A:251 , HOH A:590
BINDING SITE FOR RESIDUE EDO A 13
11
BC2
SOFTWARE
EDO A:1 , EDO A:8 , SER A:114 , ARG A:115 , HIS A:307 , GLY A:308 , HOH A:511 , HOH A:519
BINDING SITE FOR RESIDUE DMS A 14
12
BC3
SOFTWARE
HOH A:34 , SER A:204 , ALA A:300 , PHE A:324 , THR A:325 , GLY A:327 , LEU A:328 , HOH A:385 , HOH A:441 , HOH A:504
BINDING SITE FOR RESIDUE DMS A 15
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041034 (E103Q, chain A, )
2: VAR_019928 (R140C, chain A, )
3: VAR_041035 (R246H, chain A, )
4: VAR_041036 (E351K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041034
E
103
Q
PMYT1_HUMAN
Polymorphism
55834293
A
E
103
Q
2
UniProt
VAR_019928
R
140
C
PMYT1_HUMAN
Polymorphism
4149796
A
R
140
C
3
UniProt
VAR_041035
R
246
H
PMYT1_HUMAN
Polymorphism
35192104
A
R
246
H
4
UniProt
VAR_041036
E
351
K
PMYT1_HUMAN
Polymorphism
56382954
A
E
351
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:116-139)
2: PROTEIN_KINASE_ST (A:229-241)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PMYT1_HUMAN
116-139
1
A:116-139
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PMYT1_HUMAN
229-241
1
A:229-241
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_3p1aA01 (A:110-359)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-3p1aA01
A:110-359
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (100 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3P1A
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
