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3P0X
Asym. Unit
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Asym.Unit (549 KB)
Biol.Unit 1 (542 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM BRUCELLA MELITENSIS, BOUND TO MAGNESIUM ISOCITRATE
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
29 Sep 10 (Deposition) - 27 Oct 10 (Release) - 09 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Lyase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Ssgcid, A. Gardberg, T. Edwards, M. Gander, B. Staker, L. Stewart
Crystal Structure Of Isocitrate Lyase From Brucella Melitensis, Bound To Magnesium Isocitrate
To Be Published
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: ISOCITRIC ACID (ICTa)
2b: ISOCITRIC ACID (ICTb)
2c: ISOCITRIC ACID (ICTc)
2d: ISOCITRIC ACID (ICTd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
ICT
4
Ligand/Ion
ISOCITRIC ACID
3
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:92 , HOH A:562 , ARG B:116 , HOH B:530 , HOH B:666
BINDING SITE FOR RESIDUE EDO A 440
02
AC2
SOFTWARE
CYS A:275 , ASP A:276 , LYS A:304 , LEU A:305 , HOH A:475
BINDING SITE FOR RESIDUE EDO A 445
03
AC3
SOFTWARE
SER A:84 , GLY A:85 , TRP A:86 , ASP A:147 , CYS A:185 , GLY A:186 , HIS A:187 , ARG A:222 , GLU A:281 , ASN A:309 , SER A:311 , SER A:313 , THR A:343 , LEU A:344 , MG A:430 , HOH A:585 , HOH A:586
BINDING SITE FOR RESIDUE ICT A 450
04
AC4
SOFTWARE
ASP A:147 , ICT A:450 , HOH A:584 , HOH A:585 , HOH A:586
BINDING SITE FOR RESIDUE MG A 430
05
AC5
SOFTWARE
ILE B:19 , ASP B:276 , LYS B:304 , LEU B:305 , HOH B:516
BINDING SITE FOR RESIDUE EDO B 445
06
AC6
SOFTWARE
TYR B:82 , SER B:84 , GLY B:85 , TRP B:86 , ASP B:147 , CYS B:185 , GLY B:186 , HIS B:187 , ARG B:222 , GLU B:281 , ASN B:309 , SER B:311 , SER B:313 , THR B:343 , MG B:430 , HOH B:486 , HOH B:535 , HOH B:536
BINDING SITE FOR RESIDUE ICT B 450
07
AC7
SOFTWARE
ASP B:147 , ICT B:450 , HOH B:486 , HOH B:535 , HOH B:536
BINDING SITE FOR RESIDUE MG B 430
08
AC8
SOFTWARE
ILE C:19 , CYS C:275 , ASP C:276 , LYS C:304 , LEU C:305 , HOH C:556
BINDING SITE FOR RESIDUE EDO C 445
09
AC9
SOFTWARE
SER C:84 , GLY C:85 , TRP C:86 , ASP C:147 , CYS C:185 , GLY C:186 , HIS C:187 , ARG C:222 , GLU C:281 , ASN C:309 , SER C:311 , SER C:313 , THR C:343 , MG C:430 , HOH C:517 , HOH C:570
BINDING SITE FOR RESIDUE ICT C 450
10
BC1
SOFTWARE
ASP C:147 , ICT C:450 , HOH C:517 , HOH C:518 , HOH C:570
BINDING SITE FOR RESIDUE MG C 430
11
BC2
SOFTWARE
ARG C:116 , HOH C:612 , HOH C:664 , ARG D:116 , HOH D:484
BINDING SITE FOR RESIDUE EDO C 440
12
BC3
SOFTWARE
ASP D:276 , LYS D:304 , LEU D:305 , HOH D:555
BINDING SITE FOR RESIDUE EDO D 445
13
BC4
SOFTWARE
TYR D:82 , SER D:84 , GLY D:85 , TRP D:86 , ASP D:147 , CYS D:185 , GLY D:186 , HIS D:187 , ARG D:222 , GLU D:281 , ASN D:309 , SER D:311 , SER D:313 , THR D:343 , LEU D:344 , MG D:430 , HOH D:551 , HOH D:553
BINDING SITE FOR RESIDUE ICT D 450
14
BC5
SOFTWARE
ASP D:147 , ICT D:450 , HOH D:485 , HOH D:551 , HOH D:553
BINDING SITE FOR RESIDUE MG D 430
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_ICL_3p0xD01 (D:240-424)
1b: PFAM_ICL_3p0xD02 (D:240-424)
1c: PFAM_ICL_3p0xD03 (D:240-424)
1d: PFAM_ICL_3p0xD04 (D:240-424)
1e: PFAM_ICL_3p0xD05 (D:240-424)
1f: PFAM_ICL_3p0xD06 (D:240-424)
1g: PFAM_ICL_3p0xD07 (D:240-424)
1h: PFAM_ICL_3p0xD08 (D:240-424)
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Clan
:
PK_TIM
(63)
Family
:
ICL
(3)
Brucella abortus (strain 2308)
(2)
1a
ICL-3p0xD01
D:240-424
1b
ICL-3p0xD02
D:240-424
1c
ICL-3p0xD03
D:240-424
1d
ICL-3p0xD04
D:240-424
1e
ICL-3p0xD05
D:240-424
1f
ICL-3p0xD06
D:240-424
1g
ICL-3p0xD07
D:240-424
1h
ICL-3p0xD08
D:240-424
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Asymmetric Unit 1
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