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3OZV
Biol. Unit 2
Info
Asym.Unit (148 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF FLAVOHEMOGLOBIN FROM R. EUTROPHUS IN COMPLEX WITH ECONAZOLE
Authors
:
E. El Hammi, E. Warkentin, U. Demmer, U. Ermler, L. Baciou
Date
:
27 Sep 10 (Deposition) - 16 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Globin Fold, Antiparallel Beta-Barrel, Alpha/Beta Fold, Hem-, Fad-, Nad- Binding Domains, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. El Hammi, E. Warkentin, U. Demmer, F. Limam, N. M. Marzouki, U. Ermler, L. Baciou
Structure Of Ralstonia Eutropha Flavohemoglobin In Complex With Three Antibiotic Azole Compounds.
Biochemistry V. 50 1255 2011
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: 1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-H... (DGGa)
1b: 1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-H... (DGGb)
2a: 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-... (ECNa)
2b: 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-... (ECNb)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DGG
1
Ligand/Ion
1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL
2
ECN
1
Ligand/Ion
1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE
3
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL B:42 , PHE B:43 , ASN B:44 , ILE B:81 , LYS B:84 , HIS B:85 , LEU B:88 , VAL B:90 , GLN B:94 , TYR B:95 , TYR B:126 , LEU B:129 , ALA B:130 , PRO B:398 , ASP B:399 , DGG B:406 , ECN B:411 , HOH B:429
BINDING SITE FOR RESIDUE HEM B 404
2
AC2
SOFTWARE
ASN B:44 , ALA B:46 , GLU B:49 , GLN B:50 , LYS B:84 , TYR B:190 , ARG B:206 , GLN B:207 , TYR B:208 , SER B:209 , SER B:222 , VAL B:223 , LYS B:224 , GLN B:231 , PRO B:232 , GLY B:234 , TYR B:235 , VAL B:236 , SER B:237 , VAL B:276 , THR B:279 , GLU B:394 , VAL B:395 , PHE B:396 , HOH B:409 , HOH B:415 , HOH B:423 , HOH B:452
BINDING SITE FOR RESIDUE FAD B 405
3
AC3
SOFTWARE
ALA B:60 , ALA B:63 , GLU B:66 , VAL B:77 , ILE B:81 , TYR B:126 , LEU B:129 , GLU B:403 , HEM B:404 , ECN B:411
BINDING SITE FOR RESIDUE DGG B 406
4
AC5
SOFTWARE
ASN A:44 , ALA A:46 , GLN A:48 , GLU A:49 , TYR A:190 , ARG A:206 , GLN A:207 , TYR A:208 , SER A:209 , SER A:222 , VAL A:223 , LYS A:224 , GLU A:226 , GLN A:231 , PRO A:232 , GLY A:234 , TYR A:235 , VAL A:236 , SER A:237 , VAL A:276 , THR A:279 , VAL A:395 , PHE A:396 , GLY A:397 , PRO B:15 , TYR B:62
BINDING SITE FOR RESIDUE FAD A 405
5
AC8
SOFTWARE
ILE B:24 , ILE B:25 , PHE B:28 , PHE B:43 , GLN B:53 , ALA B:56 , LEU B:57 , LEU B:102 , HEM B:404 , DGG B:406
BINDING SITE FOR RESIDUE ECN B 411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:9-133)
2: FAD_FR (B:152-262)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HMP_CUPNH
9-133
1
-
B:9-133
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
HMP_CUPNH
152-262
1
-
B:152-262
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3ozva1 (A:1-150)
1b: SCOP_d3ozvb1 (B:1-150)
2a: SCOP_d3ozva2 (A:151-261)
2b: SCOP_d3ozvb2 (B:151-261)
3a: SCOP_d3ozva3 (A:262-403)
3b: SCOP_d3ozvb3 (B:262-403)
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Classes
(
)
(
)
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)
(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Ralstonia eutropha [TaxId: 381666]
(3)
1a
d3ozva1
A:1-150
1b
d3ozvb1
B:1-150
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Ralstonia eutropha [TaxId: 381666]
(3)
2a
d3ozva2
A:151-261
2b
d3ozvb2
B:151-261
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Ralstonia eutropha [TaxId: 381666]
(3)
3a
d3ozva3
A:262-403
3b
d3ozvb3
B:262-403
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_FAD_binding_6_3ozvB01 (B:156-261)
1b: PFAM_FAD_binding_6_3ozvB02 (B:156-261)
2a: PFAM_Globin_3ozvB03 (B:6-103)
2b: PFAM_Globin_3ozvB04 (B:6-103)
3a: PFAM_NAD_binding_1_3ozvB05 (B:271-379)
3b: PFAM_NAD_binding_1_3ozvB06 (B:271-379)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_6
(24)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
1a
FAD_binding_6-3ozvB01
B:156-261
1b
FAD_binding_6-3ozvB02
B:156-261
Clan
:
Globin
(291)
Family
:
Globin
(264)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
2a
Globin-3ozvB03
B:6-103
2b
Globin-3ozvB04
B:6-103
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
3a
NAD_binding_1-3ozvB05
B:271-379
3b
NAD_binding_1-3ozvB06
B:271-379
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Chain B
Asymmetric Unit 1
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Asym.Unit (148 KB)
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