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3OZU
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF FLAVOHEMOGLOBIN FROM R. EUTROPHUS IN COMPLEX WITH MICONAZOLE
Authors
:
E. El Hammi, E. Warkentin, U. Demmer, U. Ermler, L. Baciou
Date
:
27 Sep 10 (Deposition) - 16 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Globin Fold, Antiparallel Beta-Barrel, Alpha/Beta Fold, Hem-, Fad-, Nad- Binding Domains, Lipid Binding Protein
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Reference
:
E. El Hammi, E. Warkentin, U. Demmer, F. Limam, N. M. Marzouki, U. Ermler, L. Baciou
Structure Of Ralstonia Eutropha Flavohemoglobin In Complex With Three Antibiotic Azole Compounds.
Biochemistry V. 50 1255 2011
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3a: PHOSPHATE ION (PO4a)
4a: 1-[(2R)-2-[(2,4-DICHLOROBENZYL)OXY... (X89a)
View:
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No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
X89
1
Ligand/Ion
1-[(2R)-2-[(2,4-DICHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:42 , PHE A:43 , ASN A:44 , ASN A:80 , ILE A:81 , LYS A:84 , HIS A:85 , LEU A:88 , GLN A:94 , TYR A:95 , VAL A:98 , TYR A:126 , LEU A:129 , ALA A:130 , PO4 A:406 , X89 A:411 , HOH A:533 , HOH A:573
BINDING SITE FOR RESIDUE HEM A 404
2
AC2
SOFTWARE
ALA A:46 , HIS A:47 , TYR A:190 , ARG A:206 , GLN A:207 , TYR A:208 , SER A:209 , SER A:222 , VAL A:223 , LYS A:224 , GLU A:226 , GLY A:227 , GLN A:231 , PRO A:232 , GLY A:234 , TYR A:235 , VAL A:236 , SER A:237 , GLU A:394 , VAL A:395 , GLY A:397 , PRO A:398 , HOH A:438 , HOH A:449 , HOH A:456 , HOH A:476 , HOH A:558 , HOH A:668 , HOH A:700
BINDING SITE FOR RESIDUE FAD A 405
3
AC3
SOFTWARE
ILE A:25 , PHE A:28 , PHE A:43 , ALA A:56 , VAL A:61 , LEU A:102 , ALA A:125 , TYR A:126 , HEM A:404 , PO4 A:406 , HOH A:561
BINDING SITE FOR RESIDUE X89 A 411
4
AC4
SOFTWARE
ALA A:60 , VAL A:61 , LEU A:129 , HEM A:404 , X89 A:411 , HOH A:583
BINDING SITE FOR RESIDUE PO4 A 406
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:9-133)
2: FAD_FR (A:152-262)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HMP_CUPNH
9-133
1
A:9-133
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
HMP_CUPNH
152-262
1
A:152-262
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3ozua1 (A:1-150)
2a: SCOP_d3ozua2 (A:151-261)
3a: SCOP_d3ozua3 (A:262-403)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Ralstonia eutropha [TaxId: 381666]
(3)
1a
d3ozua1
A:1-150
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Ralstonia eutropha [TaxId: 381666]
(3)
2a
d3ozua2
A:151-261
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Ralstonia eutropha [TaxId: 381666]
(3)
3a
d3ozua3
A:262-403
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_FAD_binding_6_3ozuA01 (A:156-261)
2a: PFAM_Globin_3ozuA02 (A:6-103)
3a: PFAM_NAD_binding_1_3ozuA03 (A:271-379)
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Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_6
(24)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
1a
FAD_binding_6-3ozuA01
A:156-261
Clan
:
Globin
(291)
Family
:
Globin
(264)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
2a
Globin-3ozuA02
A:6-103
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)
(3)
3a
NAD_binding_1-3ozuA03
A:271-379
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Chain A
Asymmetric Unit 1
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Asym.Unit (82 KB)
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