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3OZM
Asym. Unit
Info
Asym.Unit (540 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (140 KB)
Biol.Unit 3 (139 KB)
Biol.Unit 4 (137 KB)
Biol.Unit 5 (532 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENOLASE SUPERFAMILY MEMBER FROM BORDETELLA BRONCHISEPTICA COMPLEXED WITH MG, M-XYLARATE AND L-LYXARATE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Date
:
25 Sep 10 (Deposition) - 28 Sep 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Alpha-Beta Barrel, Enolase Superfamily Member, Function Unknown, Slow Substrate M-Xylarate, M-Xylarate Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. Wichelecki, J. A. Gerlt, S. C. Almo
Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate
To Be Published
[
close entry info
]
Hetero Components
(4, 26)
Info
All Hetero Components
1a: D-XYLARIC ACID (DXLa)
1b: D-XYLARIC ACID (DXLb)
1c: D-XYLARIC ACID (DXLc)
1d: D-XYLARIC ACID (DXLd)
1e: D-XYLARIC ACID (DXLe)
1f: D-XYLARIC ACID (DXLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: L-ARABINARIC ACID (LY9a)
3b: L-ARABINARIC ACID (LY9b)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DXL
6
Ligand/Ion
D-XYLARIC ACID
2
GOL
10
Ligand/Ion
GLYCEROL
3
LY9
2
Ligand/Ion
L-ARABINARIC ACID
4
MG
8
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:201 , GLU A:227 , GLU A:254 , DXL A:391 , HOH A:2283
BINDING SITE FOR RESIDUE MG A 390
02
AC2
SOFTWARE
ASP B:201 , GLU B:227 , GLU B:254 , DXL B:391 , HOH B:2286
BINDING SITE FOR RESIDUE MG B 390
03
AC3
SOFTWARE
ASP C:201 , GLU C:227 , GLU C:254 , DXL C:391 , HOH C:2285
BINDING SITE FOR RESIDUE MG C 390
04
AC4
SOFTWARE
ASP D:201 , GLU D:227 , GLU D:254 , LY9 D:391 , HOH D:2281
BINDING SITE FOR RESIDUE MG D 390
05
AC5
SOFTWARE
ASP E:201 , GLU E:227 , GLU E:254 , DXL E:391 , HOH E:2287
BINDING SITE FOR RESIDUE MG E 390
06
AC6
SOFTWARE
ASP F:201 , GLU F:227 , GLU F:254 , DXL F:391 , HOH F:399
BINDING SITE FOR RESIDUE MG F 390
07
AC7
SOFTWARE
ASP G:201 , GLU G:227 , GLU G:254 , DXL G:391 , HOH G:2284
BINDING SITE FOR RESIDUE MG G 390
08
AC8
SOFTWARE
ASP H:201 , GLU H:227 , GLU H:254 , LY9 H:391 , HOH H:2282
BINDING SITE FOR RESIDUE MG H 390
09
AC9
SOFTWARE
SER A:25 , LYS A:30 , TYR A:147 , LYS A:171 , LYS A:173 , ASP A:201 , ASN A:203 , GLU A:227 , GLU A:254 , HIS A:304 , PHE A:306 , GLU A:329 , MG A:390
BINDING SITE FOR RESIDUE DXL A 391
10
BC1
SOFTWARE
SER B:25 , LYS B:30 , TYR B:147 , LYS B:171 , LYS B:173 , ASP B:201 , ASN B:203 , GLU B:227 , GLU B:254 , HIS B:304 , PHE B:306 , GLU B:329 , MG B:390
BINDING SITE FOR RESIDUE DXL B 391
11
BC2
SOFTWARE
SER C:25 , LYS C:30 , TYR C:147 , LYS C:171 , LYS C:173 , ASP C:201 , ASN C:203 , GLU C:227 , GLU C:254 , HIS C:304 , PHE C:306 , GLU C:329 , MG C:390 , HOH C:735
BINDING SITE FOR RESIDUE DXL C 391
12
BC3
SOFTWARE
LYS D:171 , LYS D:173 , ASP D:201 , ASN D:203 , GLU D:227 , GLU D:254 , HIS D:304 , PHE D:306 , GLU D:329 , MG D:390 , HOH D:839 , HOH D:2323
BINDING SITE FOR RESIDUE LY9 D 391
13
BC4
SOFTWARE
SER E:25 , LYS E:30 , TYR E:147 , LYS E:171 , LYS E:173 , ASP E:201 , ASN E:203 , GLU E:227 , GLU E:254 , HIS E:304 , PHE E:306 , GLU E:329 , MG E:390 , HOH E:615
BINDING SITE FOR RESIDUE DXL E 391
14
BC5
SOFTWARE
SER F:25 , LYS F:30 , TYR F:147 , LYS F:171 , LYS F:173 , ASP F:201 , ASN F:203 , GLU F:227 , GLU F:254 , HIS F:304 , PHE F:306 , GLU F:329 , MG F:390
BINDING SITE FOR RESIDUE DXL F 391
15
BC6
SOFTWARE
SER G:25 , LYS G:30 , TYR G:147 , LYS G:171 , LYS G:173 , ASP G:201 , ASN G:203 , GLU G:227 , GLU G:254 , HIS G:304 , PHE G:306 , GLU G:329 , MG G:390
BINDING SITE FOR RESIDUE DXL G 391
16
BC7
SOFTWARE
LYS H:30 , LYS H:171 , LYS H:173 , ASP H:201 , ASN H:203 , GLU H:227 , GLU H:254 , HIS H:304 , PHE H:306 , GLU H:329 , MG H:390 , HOH H:1449 , HOH H:2297
BINDING SITE FOR RESIDUE LY9 H 391
17
BC8
SOFTWARE
THR E:47 , ARG E:120 , GLU E:364 , ILE E:365 , TRP E:367 , HOH E:2125
BINDING SITE FOR RESIDUE GOL E 392
18
BC9
SOFTWARE
GLU C:197 , GLY C:222 , CYS C:223 , PRO C:247 , ARG C:249 , HOH C:435 , HOH C:723 , HOH C:903
BINDING SITE FOR RESIDUE GOL C 392
19
CC1
SOFTWARE
HOH B:644 , GLU D:197 , GLY D:222 , CYS D:223 , TYR D:224 , PRO D:247 , ARG D:249 , HOH D:403 , HOH D:621
BINDING SITE FOR RESIDUE GOL D 392
20
CC2
SOFTWARE
GLU H:197 , GLY H:222 , CYS H:223 , TYR H:224 , PRO H:247 , ARG H:249 , HOH H:430 , HOH H:433 , HOH H:647
BINDING SITE FOR RESIDUE GOL H 392
21
CC3
SOFTWARE
HIS G:86 , PHE G:89 , HIS G:90 , ARG G:259 , ASN G:260 , GLU G:286 , HOH G:2017
BINDING SITE FOR RESIDUE GOL G 392
22
CC4
SOFTWARE
ASP C:57 , HOH C:693 , HOH C:1109 , ARG E:63 , GLU E:92 , HOH E:636
BINDING SITE FOR RESIDUE GOL C 393
23
CC5
SOFTWARE
HIS B:86 , HIS B:90 , ARG B:259 , ASN B:260 , GLU B:286 , HOH B:1475
BINDING SITE FOR RESIDUE GOL B 392
24
CC6
SOFTWARE
ARG B:63 , ASP B:67 , GLU B:92 , HOH B:806 , HOH B:1344 , HOH B:1728 , ASP H:57
BINDING SITE FOR RESIDUE GOL B 393
25
CC7
SOFTWARE
ASP C:67 , VAL C:68 , GLU C:92 , HOH C:1340 , HOH C:2249 , ASP E:57 , ILE E:381 , HOH E:2216
BINDING SITE FOR RESIDUE GOL C 394
26
CC8
SOFTWARE
THR A:47 , VAL A:49 , ARG A:120 , GLU A:364 , ILE A:365 , TRP A:367
BINDING SITE FOR RESIDUE GOL A 392
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3ozma1 (A:2-132)
1b: SCOP_d3ozmb1 (B:2-132)
1c: SCOP_d3ozmc1 (C:2-132)
1d: SCOP_d3ozmd1 (D:2-132)
1e: SCOP_d3ozme1 (E:2-132)
1f: SCOP_d3ozmf1 (F:2-132)
1g: SCOP_d3ozmg1 (G:2-132)
1h: SCOP_d3ozmh1 (H:2-132)
2a: SCOP_d3ozma2 (A:133-387)
2b: SCOP_d3ozmb2 (B:133-387)
2c: SCOP_d3ozmc2 (C:133-387)
2d: SCOP_d3ozmd2 (D:133-382)
2e: SCOP_d3ozme2 (E:133-387)
2f: SCOP_d3ozmf2 (F:133-387)
2g: SCOP_d3ozmg2 (G:133-387)
2h: SCOP_d3ozmh2 (H:133-381)
View:
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Classes
(
)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Bordetella bronchiseptica [TaxId: 518]
(3)
1a
d3ozma1
A:2-132
1b
d3ozmb1
B:2-132
1c
d3ozmc1
C:2-132
1d
d3ozmd1
D:2-132
1e
d3ozme1
E:2-132
1f
d3ozmf1
F:2-132
1g
d3ozmg1
G:2-132
1h
d3ozmh1
H:2-132
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Bordetella bronchiseptica [TaxId: 518]
(3)
2a
d3ozma2
A:133-387
2b
d3ozmb2
B:133-387
2c
d3ozmc2
C:133-387
2d
d3ozmd2
D:133-382
2e
d3ozme2
E:133-387
2f
d3ozmf2
F:133-387
2g
d3ozmg2
G:133-387
2h
d3ozmh2
H:133-381
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (540 KB)
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