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3OZ2
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (146 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A GERANYLGERANYL BACTERIOCHLOROPHYLL REDUCTASE-LIKE (TA0516) FROM THERMOPLASMA ACIDOPHILUM AT 1.60 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
24 Sep 10 (Deposition) - 27 Oct 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Flavoprotein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Xu, T. Eguchi, I. I. Mathews, C. L. Rife, H. J. Chiu, C. L. Farr, J. Feuerhelm, L. Jaroszewski, H. E. Klock, M. W. Knuth, M. D. Miller, D. Weekes, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Insights Into Substrate Specificity Of Geranylgeranyl Reductases Revealed By The Structure Of Digeranylgeranylglycerophospholipid Reductase, An Essential Enzyme In The Biosynthesis Of Archaeal Membrane Lipids.
J. Mol. Biol. V. 404 403 2010
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Hetero Components
(5, 27)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
5a: (2R)-3-{[(R)-{[(2S)-2,3-DIHYDROXYP... (OZ2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
5
OZ2
1
Ligand/Ion
(2R)-3-{[(R)-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6Z)-TRIDEC-6-ENOYLOXY]PROPYL (9Z)-OCTADEC-9-ENOATE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLY A:12 , PRO A:13 , GLY A:14 , GLU A:33 , LYS A:34 , ARG A:35 , ARG A:43 , CYS A:44 , GLY A:45 , GLU A:46 , GLY A:47 , ARG A:100 , PRO A:123 , ALA A:124 , ALA A:156 , ASP A:157 , GLY A:158 , GLU A:162 , PHE A:213 , VAL A:264 , GLY A:282 , ASP A:283 , GLY A:294 , GLY A:295 , ILE A:296 , ALA A:299 , OZ2 A:502 , HOH A:517 , HOH A:518 , HOH A:524 , HOH A:528 , HOH A:622 , HOH A:623 , HOH A:628 , HOH A:630 , HOH A:687
BINDING SITE FOR RESIDUE FAD A 501
02
AC2
SOFTWARE
SER A:49 , TYR A:209 , TRP A:211 , PRO A:290 , ILE A:291 , THR A:292 , GLY A:293 , LYS A:338 , LEU A:349 , ILE A:372 , SER A:373 , VAL A:374 , FAD A:501 , EDO A:508 , GOL A:515 , HOH A:655 , HOH A:805 , HOH A:836
BINDING SITE FOR RESIDUE OZ2 A 502
03
AC3
SOFTWARE
VAL A:118 , TRP A:119 , VAL A:120 , HIS A:141 , HOH A:575 , HOH A:790
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
LYS A:138 , GLU A:312 , GLU A:315 , HOH A:616
BINDING SITE FOR RESIDUE EDO A 504
05
AC5
SOFTWARE
GLY A:132 , LYS A:133 , VAL A:134 , MSE A:275 , HOH A:585
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
TYR A:4 , HOH A:670 , HOH A:747
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
ASN A:177 , SER A:227 , LYS A:346 , GLU A:347 , HOH A:617 , HOH A:785
BINDING SITE FOR RESIDUE EDO A 507
08
AC8
SOFTWARE
ASP A:289 , THR A:292 , GLY A:294 , ASN A:298 , OZ2 A:502 , EDO A:509
BINDING SITE FOR RESIDUE EDO A 508
09
AC9
SOFTWARE
ASN A:298 , VAL A:301 , ARG A:334 , LYS A:338 , EDO A:508 , HOH A:666
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
ASP A:117 , TRP A:119 , HOH A:635
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
HOH A:558 , HOH A:684 , HOH A:769 , HOH A:788
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
ALA A:23 , LEU A:27 , HOH A:557 , HOH A:633 , HOH A:705
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
GLY A:254 , LYS A:270 , MSE A:271 , HOH A:589 , HOH A:626 , HOH A:672 , HOH A:765
BINDING SITE FOR RESIDUE EDO A 513
14
BC5
SOFTWARE
PRO A:272 , THR A:274 , MSE A:275 , PRO A:321 , MSE A:324 , GLN A:325 , GLU A:328 , HOH A:604
BINDING SITE FOR RESIDUE GOL A 514
15
BC6
SOFTWARE
GLY A:47 , LEU A:48 , SER A:49 , VAL A:69 , THR A:197 , OZ2 A:502
BINDING SITE FOR RESIDUE GOL A 515
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0 ; only for superseded entry 3CGV: 2,2)
Info
all CATH domains
1a: CATH_3cgvA02 ()
2a: CATH_3cgvA01 ()
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_FAD_binding_3_3oz2A01 (A:3-221)
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Clans
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(
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Families
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(
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Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
FAD_binding_3
(21)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(1)
1a
FAD_binding_3-3oz2A01
A:3-221
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Chain A
Asymmetric Unit 1
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Asym.Unit (154 KB)
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