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3OYP
Biol. Unit 1
Info
Asym.Unit (64 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
HCV NS3/4A IN COMPLEX WITH LIGAND 3
Authors
:
M. Hagel, D. Niu, T. St. Martin, M. P. Sheets, L. Qiao, H. Bernard, R. M. K Z. Zhu, M. T. Labenski, P. C. Chaturvedi, M. Nacht, W. F. Westlin, R. C. P J. Singh
Date
:
23 Sep 10 (Deposition) - 01 Dec 10 (Release) - 19 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,E (1x)
Biol. Unit 2: B,D,F (1x)
Keywords
:
Serine Protease, Ns3, Ns4A, Hepatitis C Virus, Protease Inhibition, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hagel, D. Niu, T. St. Martin, M. P. Sheets, L. Qiao, H. Bernard, R. M. Karp, Z. Zhu, M. T. Labenski, P. Chaturvedi, M. Nacht, W. F. Westlin, R. C. Petter, J. Singh
Selective Irreversible Inhibition Of A Protease By Targetin A Noncatalytic Cysteine.
Nat. Chem. Biol. V. 7 22 2011
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: (4R)-4-[(7-BROMOISOQUINOLIN-1-YL)O... (0Y8a)
1b: (4R)-4-[(7-BROMOISOQUINOLIN-1-YL)O... (0Y8b)
2a: (1R,2S)-1-AMINO-2-ETHENYLCYCLOPROP... (0Y9a)
2b: (1R,2S)-1-AMINO-2-ETHENYLCYCLOPROP... (0Y9b)
3a: CYCLOPROPANESULFONAMIDE (0YAa)
3b: CYCLOPROPANESULFONAMIDE (0YAb)
4a: D-ALANINE (DALa)
4b: D-ALANINE (DALb)
5a: PROPANOIC ACID (PPIa)
5b: PROPANOIC ACID (PPIb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0Y8
1
Mod. Amino Acid
(4R)-4-[(7-BROMOISOQUINOLIN-1-YL)OXY]-L-PROLINE
2
0Y9
1
OTHER
(1R,2S)-1-AMINO-2-ETHENYLCYCLOPROPANECARBOXYLIC ACID
3
0YA
1
OTHER
CYCLOPROPANESULFONAMIDE
4
DAL
1
OTHER
D-ALANINE
5
PPI
1
OTHER
PROPANOIC ACID
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:97 , CYS A:99 , CYS A:145 , HOH A:305
BINDING SITE FOR RESIDUE ZN A 201
2
AC3
SOFTWARE
GLN A:41 , PHE A:43 , HIS A:57 , GLY A:58 , ASP A:81 , VAL A:132 , LEU A:135 , LYS A:136 , GLY A:137 , SER A:138 , SER A:139 , PHE A:154 , ARG A:155 , ALA A:156 , ALA A:157 , CYS A:159
BINDING SITE FOR CHAIN E OF PEPTIDOMIMETIC INHIBITOR
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLG_HCVJA_014 (I114I, chain A, )
2: VAR_POLG_HCVJA_015 (V132V, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HCVJA_014
*
V
1140
I
POLG_HCVJA
---
---
A
I
114
I
2
UniProt
VAR_POLG_HCVJA_015
*
I
1158
V
POLG_HCVJA
---
---
A
V
132
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_S29_3oypB01 (B:30-175)
1b: PFAM_Peptidase_S29_3oypB02 (B:30-175)
2a: PFAM_HCV_NS4a_3oypD01 (D:221-232)
2b: PFAM_HCV_NS4a_3oypD02 (D:221-232)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_S29
(32)
Hepatitis C virus genotype 1b (isolate Japanese) (HCV)
(4)
1a
Peptidase_S29-3oypB01
B:30-175
1b
Peptidase_S29-3oypB02
B:30-175
Clan
:
no clan defined [family: HCV_NS4a]
(14)
Family
:
HCV_NS4a
(14)
Hepatitis C virus genotype 1b (isolate Japanese) (HCV)
(1)
2a
HCV_NS4a-3oypD01
D:221-232
2b
HCV_NS4a-3oypD02
D:221-232
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Asymmetric Unit 1
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Asym.Unit (64 KB)
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